1 HAMP#1
154-227 aa · 74 aa · 16.3% of protein
Raw token
HAMP:154:0.00000000000000341:227:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW142_RS08450
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003473185
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473185#DW142_RS08450Stable P2CS identifier used across views.
GenomeGCF_003473185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 454 aa (55.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-297 aa · 65 aa · 14.3% of protein
Raw token
HisKA:233:0.00000000000000534:297:65:643 HATPase_c#3
343-454 aa · 112 aa · 24.7% of protein
Raw token
HATPase_c:343:2.14e-28:454:112:109- Raw architecture: HAMP:154:0.00000000000000341:227:74:69#HisKA:233:0.00000000000000534:297:65:64#HATPase_c:343:2.14e-28:454:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473185::NZ_QRLN01000009.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81637-83672Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW142_08450RefSeq proteinWP_118341473.1
Context group ID
GCF_003473185::NZ_QRLN01000009.1::G00044Context members
DW142_RS08445DW142_RS08450
Partner locus tags
DW142_RS08445DW142_RS08450
Partner old locus tags
DW142_08445DW142_08450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118341473.1Primary protein accession used for annex mappings.
UniProt accessionA0A8B3BZZ1Primary UniProt accession resolved in the annex database.
UniProt IDA0A8B3BZZ1_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW142_RS08450Primary locus identifier stored in the genes table.
Old locus tagDW142_08450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRLN01000009.1Sequence record reported by the local genomic context database.
Genomic interval82 308-83 672 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span81 637-83 672 ntGCF_003473185::NZ_QRLN01000009.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473185::NZ_QRLN01000009.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRLN01000009.1All displayed genes belong to this local TCS context.
Neighborhood span81 637-83 672 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 637 nt83 672 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW142_RS08445GCF_003473185#DW142_RS08445
RROmpR
81 637-82 311 nt · Forward (+)
DW142_RS08450GCF_003473185#DW142_RS08450
HKClassicCurrent focus
82 308-83 672 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473185#DW142_RS08450The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1915103
Simplified PFAM architecture for HKOC_1915103
PFAM domain coverage: 234 / 454 aa (51.5%)
1 aa454 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-227] | HisKA[232-297] | HATPase_c[343-453]
- Domain count: 3
- Matched identifier: HKOC_1915103
- Positioned domains: HAMP 171-227 ; HisKA 232-297 ; HATPase_c 343-453
Cluster members and taxonomy
Representative gene: GCF_003473185#DW142_RS08450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003473185
AssemblyASM347318v1 · Scaffoldhaploid
Genome composition3 176 643 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key