1 HAMP#1
258-326 aa · 69 aa · 12.0% of protein
Raw token
HAMP:258:0.000000000028:326:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW270_RS13560
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003471005
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003471005#DW270_RS13560Stable P2CS identifier used across views.
GenomeGCF_003471005Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 576 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation3 items
2 His_kinase#2
341-420 aa · 80 aa · 13.9% of protein
Raw token
His_kinase:341:2.45e-25:420:80:803 HATPase_c#3
443-544 aa · 102 aa · 17.7% of protein
Raw token
HATPase_c:443:0.00000633:544:108:109- Raw architecture: HAMP:258:0.000000000028:326:69:69#His_kinase:341:2.45e-25:420:80:80#HATPase_c:443:0.00000633:544:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003471005::NZ_QRIA01000023.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30820-34075Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW270_13565RefSeq proteinWP_118263241.1
Context group ID
GCF_003471005::NZ_QRIA01000023.1::G00022Context members
DW270_RS13560DW270_RS13565
Partner locus tags
DW270_RS13560DW270_RS13565
Partner old locus tags
DW270_13565DW270_13570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118263241.1Primary protein accession used for annex mappings.
UniProt accessionA0A414SAR0Primary UniProt accession resolved in the annex database.
UniProt IDA0A414SAR0_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW270_RS13560Primary locus identifier stored in the genes table.
Old locus tagDW270_13565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIA01000023.1Sequence record reported by the local genomic context database.
Genomic interval30 820-32 550 nt1 731 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 820-34 075 ntGCF_003471005::NZ_QRIA01000023.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471005::NZ_QRIA01000023.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIA01000023.1All displayed genes belong to this local TCS context.
Neighborhood span30 820-34 075 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 820 nt34 075 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW270_RS13560GCF_003471005#DW270_RS13560
HKClassicCurrent focus
30 820-32 550 nt · Forward (+)
DW270_RS13565GCF_003471005#DW270_RS13565
RRunclassified
32 516-34 075 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471005#DW270_RS13560The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1184251
Simplified PFAM architecture for HKOC_1184251
PFAM domain coverage: 129 / 576 aa (22.4%)
1 aa576 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[277-325] | His_kinase[341-420]
- Domain count: 2
- Matched identifier: HKOC_1184251
- Positioned domains: HAMP 277-325 ; His_kinase 341-420
Cluster members and taxonomy
Representative gene: GCF_003471005#DW270_RS13560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003471005
AssemblyASM347100v1 · Scaffoldhaploid
Genome composition3 413 278 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 91 · HK 44 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key