1 HisKA#1
208-272 aa · 65 aa · 15.0% of protein
Raw token
HisKA:208:3.58e-16:272:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW259_RS09810
Histidine kinase, Classic
[Ruminococcus] torques · GCF_003470435
ClassHKTypeClassicLength432 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470435#DW259_RS09810Stable P2CS identifier used across views.
GenomeGCF_003470435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length432 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 432 aa (37.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa432 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
319-414 aa · 96 aa · 22.2% of protein
Raw token
HATPase_c:319:0.0000000000000946:414:97:109- Raw architecture: HisKA:208:3.58e-16:272:65:64#HATPase_c:319:0.0000000000000946:414:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470435::NZ_QRIH01000024.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6012-8004Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW259_09810RefSeq proteinWP_009242408.1
Context group ID
GCF_003470435::NZ_QRIH01000024.1::G00019Context members
DW259_RS09805DW259_RS09810
Partner locus tags
DW259_RS09805DW259_RS09810
Partner old locus tags
DW259_09805DW259_09810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009242408.1Primary protein accession used for annex mappings.
UniProt accessionR5QD43Primary UniProt accession resolved in the annex database.
UniProt IDR5QD43_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW259_RS09810Primary locus identifier stored in the genes table.
Old locus tagDW259_09810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIH01000024.1Sequence record reported by the local genomic context database.
Genomic interval6 706-8 004 nt1 299 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 012-8 004 ntGCF_003470435::NZ_QRIH01000024.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470435::NZ_QRIH01000024.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIH01000024.1All displayed genes belong to this local TCS context.
Neighborhood span6 012-8 004 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 012 nt8 004 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW259_RS09805GCF_003470435#DW259_RS09805
RROmpR
6 012-6 731 nt · Forward (+)
DW259_RS09810GCF_003470435#DW259_RS09810
HKClassicCurrent focus
6 706-8 004 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS10475Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2151570
Simplified PFAM architecture for HKOC_2151570
PFAM domain coverage: 159 / 432 aa (36.8%)
1 aa432 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-272] | HATPase_c[320-414]
- Domain count: 2
- Matched identifier: HKOC_2151570
- Positioned domains: HisKA 209-272 ; HATPase_c 320-414
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS10475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_003470435
AssemblyASM347043v1 · Scaffoldhaploid
Genome composition2 959 517 bp · 41,5% GC[Ruminococcus] torques
Signal transduction countsGenes 53 · HK 25 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key