1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:5.66e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW259_RS00790
Response regulator OmpR family
[Ruminococcus] torques · GCF_003470435
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470435#DW259_RS00790Stable P2CS identifier used across views.
GenomeGCF_003470435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-226 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:151:9.09e-38:226:76:77- Raw architecture: Response_reg:5:5.66e-40:114:111:111#Trans_reg_C:151:9.09e-38:226:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470435::NZ_QRIH01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span163021-165157Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW259_00790RefSeq proteinWP_004845611.1
Context group ID
GCF_003470435::NZ_QRIH01000001.1::G00006Context members
DW259_RS00785DW259_RS00790
Partner locus tags
DW259_RS00785DW259_RS00790
Partner old locus tags
DW259_00785DW259_00790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004845611.1Primary protein accession used for annex mappings.
UniProt accessionA5KJM9Primary UniProt accession resolved in the annex database.
UniProt IDA5KJM9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW259_RS00790Primary locus identifier stored in the genes table.
Old locus tagDW259_00790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIH01000001.1Sequence record reported by the local genomic context database.
Genomic interval164 471-165 157 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span163 021-165 157 ntGCF_003470435::NZ_QRIH01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470435::NZ_QRIH01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span163 021-165 157 nt2 137 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 021 nt165 157 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW259_RS00785GCF_003470435#DW259_RS00785
HKClassic
163 021-164 514 nt · Reverse (-)
DW259_RS00790GCF_003470435#DW259_RS00790
RROmpRCurrent focus
164 471-165 157 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS03025Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302075
Simplified PFAM architecture for RROC_1302075
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1302075
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS03025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_003470435
AssemblyASM347043v1 · Scaffoldhaploid
Genome composition2 959 517 bp · 41,5% GC[Ruminococcus] torques
Signal transduction countsGenes 53 · HK 25 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key