1 Response_reg#1
3-109 aa · 107 aa · 42.5% of protein
Raw token
Response_reg:3:0.000000000000609:109:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW259_RS09390
Response regulator, unclassified
[Ruminococcus] torques · GCF_003470435
ClassRRTypeunclassifiedLength252 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003470435#DW259_RS09390Stable P2CS identifier used across views.
GenomeGCF_003470435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage107 / 252 aa (42.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:0.000000000000609:109:109:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003470435::NZ_QRIH01000022.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1091-1849Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW259_09390RefSeq proteinWP_022003280.1
Context group ID
GCF_003470435::NZ_QRIH01000022.1::G00017Context members
DW259_RS09390
Partner locus tags
DW259_RS09390
Partner old locus tags
DW259_09390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022003280.1Primary protein accession used for annex mappings.
UniProt accessionR5QIT8Primary UniProt accession resolved in the annex database.
UniProt IDR5QIT8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW259_RS09390Primary locus identifier stored in the genes table.
Old locus tagDW259_09390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIH01000022.1Sequence record reported by the local genomic context database.
Genomic interval1 091-1 849 nt759 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 091-1 849 ntGCF_003470435::NZ_QRIH01000022.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470435::NZ_QRIH01000022.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIH01000022.1All displayed genes belong to this local TCS context.
Neighborhood span1 091-1 849 nt759 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 091 nt1 849 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW259_RS09390GCF_003470435#DW259_RS09390
RRunclassifiedCurrent focus
1 091-1 849 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000432115#Q6412_RS10360Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0704014
Simplified PFAM architecture for RROC_0704014
PFAM domain coverage: 107 / 252 aa (42.5%)
1 aa252 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-109]
- Domain count: 1
- Matched identifier: RROC_0704014
- Positioned domains: Response_reg 3-109 ; Response_reg 3-109
Cluster members and taxonomy
Representative gene: GCF_000432115#Q6412_RS10360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_003470435
AssemblyASM347043v1 · Scaffoldhaploid
Genome composition2 959 517 bp · 41,5% GC[Ruminococcus] torques
Signal transduction countsGenes 53 · HK 25 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key