1 HAMP#1
51-118 aa · 68 aa · 19.7% of protein
Raw token
HAMP:51:0.0000000122:118:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW259_RS06470
Histidine kinase, Classic
[Ruminococcus] torques · GCF_003470435
ClassHKTypeClassicLength346 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470435#DW259_RS06470Stable P2CS identifier used across views.
GenomeGCF_003470435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length346 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 346 aa (71.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa346 aa
Domain-by-domain annotation3 items
2 HisKA#2
122-188 aa · 67 aa · 19.4% of protein
Raw token
HisKA:122:0.0000000000000773:188:67:643 HATPase_c#3
229-339 aa · 111 aa · 32.1% of protein
Raw token
HATPase_c:229:1.65e-31:339:111:109- Raw architecture: HAMP:51:0.0000000122:118:68:69#HisKA:122:0.0000000000000773:188:67:64#HATPase_c:229:1.65e-31:339:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470435::NZ_QRIH01000012.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span428-2247Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW259_06470RefSeq proteinWP_330377976.1
Context group ID
GCF_003470435::NZ_QRIH01000012.1::G00010Context members
DW259_RS06470DW259_RS06475
Partner locus tags
DW259_RS06470DW259_RS06475
Partner old locus tags
DW259_06470DW259_06475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330377976.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW259_RS06470Primary locus identifier stored in the genes table.
Old locus tagDW259_06470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIH01000012.1Sequence record reported by the local genomic context database.
Genomic interval428-1 468 nt1 041 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span428-2 247 ntGCF_003470435::NZ_QRIH01000012.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470435::NZ_QRIH01000012.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIH01000012.1All displayed genes belong to this local TCS context.
Neighborhood span428-2 247 nt1 820 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
428 nt2 247 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW259_RS06470GCF_003470435#DW259_RS06470
HKClassicCurrent focus
428-1 468 nt · Reverse (-)
DW259_RS06475GCF_003470435#DW259_RS06475
RROmpR
1 573-2 247 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022132465#L0N16_RS12190Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2594505
Simplified PFAM architecture for HKOC_2594505
PFAM domain coverage: 174 / 382 aa (45.5%)
1 aa382 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[158-222] | HATPase_c[268-376]
- Domain count: 2
- Matched identifier: HKOC_2594505
- Positioned domains: HisKA 158-222 ; HATPase_c 268-376
Cluster members and taxonomy
Representative gene: GCF_022132465#L0N16_RS12190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_003470435
AssemblyASM347043v1 · Scaffoldhaploid
Genome composition2 959 517 bp · 41,5% GC[Ruminococcus] torques
Signal transduction countsGenes 53 · HK 25 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key