1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:3.77e-33:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW259_RS05830
Response regulator OmpR family
[Ruminococcus] torques · GCF_003470435
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470435#DW259_RS05830Stable P2CS identifier used across views.
GenomeGCF_003470435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:153:1.36e-25:229:77:77- Raw architecture: Response_reg:6:3.77e-33:115:113:111#Trans_reg_C:153:1.36e-25:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470435::NZ_QRIH01000010.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44266-46069Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW259_05830RefSeq proteinWP_004846892.1
Context group ID
GCF_003470435::NZ_QRIH01000010.1::G00007Context members
DW259_RS05825DW259_RS05830
Partner locus tags
DW259_RS05825DW259_RS05830
Partner old locus tags
DW259_05825DW259_05830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004846892.1Primary protein accession used for annex mappings.
UniProt accessionA5KM01Primary UniProt accession resolved in the annex database.
UniProt IDA5KM01_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW259_RS05830Primary locus identifier stored in the genes table.
Old locus tagDW259_05830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIH01000010.1Sequence record reported by the local genomic context database.
Genomic interval45 362-46 069 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 266-46 069 ntGCF_003470435::NZ_QRIH01000010.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470435::NZ_QRIH01000010.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIH01000010.1All displayed genes belong to this local TCS context.
Neighborhood span44 266-46 069 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 266 nt46 069 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW259_RS05825GCF_003470435#DW259_RS05825
HKClassic
44 266-45 369 nt · Forward (+)
DW259_RS05830GCF_003470435#DW259_RS05830
RROmpRCurrent focus
45 362-46 069 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS07925Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016690
Simplified PFAM architecture for RROC_1016690
PFAM domain coverage: 187 / 235 aa (79.6%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1016690
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS07925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_003470435
AssemblyASM347043v1 · Scaffoldhaploid
Genome composition2 959 517 bp · 41,5% GC[Ruminococcus] torques
Signal transduction countsGenes 53 · HK 25 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key