1 KdpD#1
24-229 aa · 206 aa · 23.0% of protein
Raw token
KdpD:24:5.2e-114:229:209:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW259_RS03065
Histidine kinase, Classic
[Ruminococcus] torques · GCF_003470435
ClassHKTypeClassicLength894 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470435#DW259_RS03065Stable P2CS identifier used across views.
GenomeGCF_003470435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
KdpDGAF_3HisKAHATPase_c
Protein length894 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage509 / 894 aa (56.9%)Merged over positioned domains only.
Domain description1 KdpD,1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa894 aa
Domain-by-domain annotation4 items
2 GAF_3#2
524-646 aa · 123 aa · 13.8% of protein
Raw token
GAF_3:524:0.00000957:646:130:1293 HisKA#3
666-733 aa · 68 aa · 7.6% of protein
Raw token
HisKA:666:0.00000000000323:733:68:644 HATPase_c#4
778-889 aa · 112 aa · 12.5% of protein
Raw token
HATPase_c:778:4.53e-31:889:112:109- Raw architecture: KdpD:24:5.2e-114:229:209:210#GAF_3:524:0.00000957:646:130:129#HisKA:666:0.00000000000323:733:68:64#HATPase_c:778:4.53e-31:889:112:109
- Domain description: 1 KdpD,1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470435::NZ_QRIH01000004.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span111152-114530Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW259_03060RefSeq proteinWP_009321384.1
Context group ID
GCF_003470435::NZ_QRIH01000004.1::G00024Context members
DW259_RS03060DW259_RS03065
Partner locus tags
DW259_RS03060DW259_RS03065
Partner old locus tags
DW259_03055DW259_03060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009321384.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW259_RS03065Primary locus identifier stored in the genes table.
Old locus tagDW259_03060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIH01000004.1Sequence record reported by the local genomic context database.
Genomic interval111 846-114 530 nt2 685 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span111 152-114 530 ntGCF_003470435::NZ_QRIH01000004.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470435::NZ_QRIH01000004.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span111 152-114 530 nt3 379 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 152 nt114 530 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW259_RS03060GCF_003470435#DW259_RS03060
RROmpR
111 152-111 853 nt · Reverse (-)
DW259_RS03065GCF_003470435#DW259_RS03065
HKClassicCurrent focus
111 846-114 530 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470435#DW259_RS03065The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0421191
Simplified PFAM architecture for HKOC_0421191
PFAM domain coverage: 488 / 894 aa (54.6%)
1 aa894 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[24-229] | DUF4118[399-503] | HisKA[666-732] | HATPase_c[778-887]
- Domain count: 4
- Matched identifier: HKOC_0421191
- Positioned domains: KdpD 24-229 ; DUF4118 399-503 ; HisKA 666-732 ; HATPase_c 778-887
Cluster members and taxonomy
Representative gene: GCF_003470435#DW259_RS03065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_003470435
AssemblyASM347043v1 · Scaffoldhaploid
Genome composition2 959 517 bp · 41,5% GC[Ruminococcus] torques
Signal transduction countsGenes 53 · HK 25 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key