1 HisKA#1
190-253 aa · 64 aa · 15.5% of protein
Raw token
HisKA:190:0.0000000093:253:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW688_RS02540
Histidine kinase, Classic
Streptococcus lutetiensis · GCF_003470165
ClassHKTypeClassicLength414 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470165#DW688_RS02540Stable P2CS identifier used across views.
GenomeGCF_003470165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length414 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 414 aa (42.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
302-411 aa · 110 aa · 26.6% of protein
Raw token
HATPase_c:302:5.07e-29:411:110:109- Raw architecture: HisKA:190:0.0000000093:253:64:64#HATPase_c:302:5.07e-29:411:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470165::NZ_QSLI01000003.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35702-37632Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW688_02545RefSeq proteinWP_220432900.1
Context group ID
GCF_003470165::NZ_QSLI01000003.1::G00004Context members
DW688_RS02535DW688_RS02540
Partner locus tags
DW688_RS02535DW688_RS02540
Partner old locus tags
DW688_02540DW688_02545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_220432900.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW688_RS02540Primary locus identifier stored in the genes table.
Old locus tagDW688_02545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLI01000003.1Sequence record reported by the local genomic context database.
Genomic interval36 388-37 632 nt1 245 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 702-37 632 ntGCF_003470165::NZ_QSLI01000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470165::NZ_QSLI01000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLI01000003.1All displayed genes belong to this local TCS context.
Neighborhood span35 702-37 632 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 702 nt37 632 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW688_RS02535GCF_003470165#DW688_RS02535
RROmpR
35 702-36 391 nt · Forward (+)
DW688_RS02540GCF_003470165#DW688_RS02540
HKClassicCurrent focus
36 388-37 632 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470165#DW688_RS02540The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2320958
Simplified PFAM architecture for HKOC_2320958
PFAM domain coverage: 176 / 414 aa (42.5%)
1 aa414 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[189-253] | HATPase_c[302-412]
- Domain count: 2
- Matched identifier: HKOC_2320958
- Positioned domains: HisKA 189-253 ; HATPase_c 302-412
Cluster members and taxonomy
Representative gene: GCF_003470165#DW688_RS02540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 150 055 · GCF_003470165
AssemblyASM347016v1 · Scaffoldhaploid
Genome composition1 887 340 bp · 37,5% GCStreptococcus lutetiensis
Signal transduction countsGenes 33 · HK 17 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key