1 Response_reg#1
9-107 aa · 99 aa · 44.4% of protein
Raw token
Response_reg:9:0.00000000000993:107:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW696_RS01355
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_003470125
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003470125#DW696_RS01355Stable P2CS identifier used across views.
GenomeGCF_003470125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 223 aa (69.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-213 aa · 55 aa · 24.7% of protein
Raw token
HTH_LUXR:159:2.88e-19:213:55:58- Raw architecture: Response_reg:9:0.00000000000993:107:100:111#HTH_LUXR:159:2.88e-19:213:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003470125::NZ_QSLD01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span337900-338571Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW696_01355RefSeq proteinWP_117790999.1
Context group ID
GCF_003470125::NZ_QSLD01000001.1::G00004Context members
DW696_RS01355
Partner locus tags
DW696_RS01355
Partner old locus tags
DW696_01355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117790999.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW696_RS01355Primary locus identifier stored in the genes table.
Old locus tagDW696_01355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLD01000001.1Sequence record reported by the local genomic context database.
Genomic interval337 900-338 571 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span337 900-338 571 ntGCF_003470125::NZ_QSLD01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470125::NZ_QSLD01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span337 900-338 571 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
337 900 nt338 571 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW696_RS01355GCF_003470125#DW696_RS01355
RRNarLCurrent focus
337 900-338 571 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470125#DW696_RS01355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600245
Simplified PFAM architecture for RROC_1600245
PFAM domain coverage: 159 / 223 aa (71.3%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-113] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1600245
- Positioned domains: Response_reg 9-113 ; Response_reg 9-113 ; GerE 160-213 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_003470125#DW696_RS01355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003470125
AssemblyASM347012v1 · Scaffoldhaploid
Genome composition2 218 563 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 10 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key