1 SBP_bac_3#1
22-238 aa · 217 aa · 22.9% of protein
Raw token
SBP_bac_3:22:6.36e-32:238:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW767_RS00010
Histidine kinase, Hybrid
Blautia obeum · GCF_003468995
ClassHKTypeHybridLength949 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003468995#DW767_RS00010Stable P2CS identifier used across views.
GenomeGCF_003468995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length949 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage722 / 949 aa (76.1%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa949 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
260-464 aa · 205 aa · 21.6% of protein
Raw token
SBP_bac_3:260:0.00000000000002:464:221:2243 HisKA#3
549-617 aa · 69 aa · 7.3% of protein
Raw token
HisKA:549:3.62e-20:617:69:644 HATPase_c#4
664-777 aa · 114 aa · 12.0% of protein
Raw token
HATPase_c:664:2.35e-30:777:114:1095 Response_reg#5
808-924 aa · 117 aa · 12.3% of protein
Raw token
Response_reg:808:4.05e-29:924:117:111- Raw architecture: SBP_bac_3:22:6.36e-32:238:227:224#SBP_bac_3:260:0.00000000000002:464:221:224#HisKA:549:3.62e-20:617:69:64#HATPase_c:664:2.35e-30:777:114:109#Response_reg:808:4.05e-29:924:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003468995::NZ_QSJW01000001.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span445-3294Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW767_00010RefSeq proteinWP_233435624.1
Context group ID
GCF_003468995::NZ_QSJW01000001.1::G00001Context members
DW767_RS00010
Partner locus tags
DW767_RS00010
Partner old locus tags
DW767_00010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_233435624.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW767_RS00010Primary locus identifier stored in the genes table.
Old locus tagDW767_00010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSJW01000001.1Sequence record reported by the local genomic context database.
Genomic interval445-3 294 nt2 850 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span445-3 294 ntGCF_003468995::NZ_QSJW01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468995::NZ_QSJW01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSJW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span445-3 294 nt2 850 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
445 nt3 294 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW767_RS00010GCF_003468995#DW767_RS00010
HKHybridCurrent focus
445-3 294 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468995#DW767_RS00010The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0328646
Simplified PFAM architecture for HKOC_0328646
PFAM domain coverage: 509 / 949 aa (53.6%)
1 aa949 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[30-239] | HisKA[549-617] | HATPase_c[664-777] | Response_reg[808-923]
- Domain count: 4
- Matched identifier: HKOC_0328646
- Positioned domains: SBP_bac_3 30-239 ; HisKA 549-617 ; HATPase_c 664-777 ; Response_reg 808-923
Cluster members and taxonomy
Representative gene: GCF_003468995#DW767_RS00010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003468995
AssemblyASM346899v1 · Scaffoldhaploid
Genome composition3 889 284 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 110 · HK 57 · RR 52CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key