1 Response_reg#1
7-80 aa · 74 aa · 28.2% of protein
Raw token
Response_reg:7:0.0000143:80:75:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW788_RS04700
Response regulator, unclassified
Bifidobacterium longum · GCF_003468825
ClassRRTypeunclassifiedLength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003468825#DW788_RS04700Stable P2CS identifier used across views.
GenomeGCF_003468825Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage74 / 262 aa (28.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:0.0000143:80:75:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003468825::NZ_QSJH01000005.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span32639-33427Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW788_04700RefSeq proteinWP_118068788.1
Context group ID
GCF_003468825::NZ_QSJH01000005.1::G00009Context members
DW788_RS04700
Partner locus tags
DW788_RS04700
Partner old locus tags
DW788_04700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118068788.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW788_RS04700Primary locus identifier stored in the genes table.
Old locus tagDW788_04700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSJH01000005.1Sequence record reported by the local genomic context database.
Genomic interval32 639-33 427 nt789 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span32 639-33 427 ntGCF_003468825::NZ_QSJH01000005.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003468825::NZ_QSJH01000005.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSJH01000005.1All displayed genes belong to this local TCS context.
Neighborhood span32 639-33 427 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 639 nt33 427 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW788_RS04700GCF_003468825#DW788_RS04700
RRunclassifiedCurrent focus
32 639-33 427 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468825#DW788_RS04700The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_0645160
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_003468825#DW788_RS04700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003468825
AssemblyASM346882v1 · Scaffoldhaploid
Genome composition2 297 471 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key