1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:5.47e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW865_RS11235
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_003467625
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467625#DW865_RS11235Stable P2CS identifier used across views.
GenomeGCF_003467625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-219 aa · 72 aa · 32.3% of protein
Raw token
Trans_reg_C:148:1.12e-29:219:77:77- Raw architecture: Response_reg:4:5.47e-33:113:111:111#Trans_reg_C:148:1.12e-29:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467625::NZ_QSHH01000014.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17617-19690Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW865_11260RefSeq proteinWP_022037876.1
Context group ID
GCF_003467625::NZ_QSHH01000014.1::G00011Context members
DW865_RS11235DW865_RS11240
Partner locus tags
DW865_RS11235DW865_RS11240
Partner old locus tags
DW865_11260DW865_11265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022037876.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q4F6L7Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q4F6L7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW865_RS11235Primary locus identifier stored in the genes table.
Old locus tagDW865_11260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHH01000014.1Sequence record reported by the local genomic context database.
Genomic interval17 617-18 288 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 617-19 690 ntGCF_003467625::NZ_QSHH01000014.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467625::NZ_QSHH01000014.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHH01000014.1All displayed genes belong to this local TCS context.
Neighborhood span17 617-19 690 nt2 074 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 617 nt19 690 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW865_RS11235GCF_003467625#DW865_RS11235
RROmpRCurrent focus
17 617-18 288 nt · Forward (+)
DW865_RS11240GCF_003467625#DW865_RS11240
HKClassic
18 272-19 690 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS12800Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1598262
Simplified PFAM architecture for RROC_1598262
PFAM domain coverage: 180 / 223 aa (80.7%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-218]
- Domain count: 2
- Matched identifier: RROC_1598262
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-218 ; Trans_reg_C 148-218
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS12800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003467625
AssemblyASM346762v1 · Scaffoldhaploid
Genome composition3 080 758 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 73 · HK 35 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key