1 Response_reg#1
6-115 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:6:1.54e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW865_RS00150
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_003467625
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467625#DW865_RS00150Stable P2CS identifier used across views.
GenomeGCF_003467625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:153:1.6e-36:228:76:77- Raw architecture: Response_reg:6:1.54e-38:115:111:111#Trans_reg_C:153:1.6e-36:228:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467625::NZ_QSHH01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32395-34516Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW865_00150RefSeq proteinWP_009243920.1
Context group ID
GCF_003467625::NZ_QSHH01000001.1::G00002Context members
DW865_RS00145DW865_RS00150
Partner locus tags
DW865_RS00145DW865_RS00150
Partner old locus tags
DW865_00145DW865_00150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009243920.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NVP5Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NVP5_MEDG5Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW865_RS00150Primary locus identifier stored in the genes table.
Old locus tagDW865_00150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHH01000001.1Sequence record reported by the local genomic context database.
Genomic interval33 824-34 516 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 395-34 516 ntGCF_003467625::NZ_QSHH01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467625::NZ_QSHH01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span32 395-34 516 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 395 nt34 516 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW865_RS00145GCF_003467625#DW865_RS00145
HKClassic
32 395-33 786 nt · Reverse (-)
DW865_RS00150GCF_003467625#DW865_RS00150
RROmpRCurrent focus
33 824-34 516 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS03320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202747
Simplified PFAM architecture for RROC_1202747
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1202747
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS03320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003467625
AssemblyASM346762v1 · Scaffoldhaploid
Genome composition3 080 758 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 73 · HK 35 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key