1 HisKA#1
492-556 aa · 65 aa · 9.0% of protein
Raw token
HisKA:492:0.00000000000000652:556:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW865_RS01730
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003467625
ClassHKTypeClassicLength723 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467625#DW865_RS01730Stable P2CS identifier used across views.
GenomeGCF_003467625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length723 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 723 aa (21.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa723 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
609-698 aa · 90 aa · 12.4% of protein
Raw token
HATPase_c:609:0.0000000000517:698:94:109- Raw architecture: HisKA:492:0.00000000000000652:556:65:64#HATPase_c:609:0.0000000000517:698:94:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467625::NZ_QSHH01000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span390957-393798Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW865_01730RefSeq proteinWP_118038544.1
Context group ID
GCF_003467625::NZ_QSHH01000001.1::G00008Context members
DW865_RS01730DW865_RS01735
Partner locus tags
DW865_RS01730DW865_RS01735
Partner old locus tags
DW865_01730DW865_01735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118038544.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW865_RS01730Primary locus identifier stored in the genes table.
Old locus tagDW865_01730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSHH01000001.1Sequence record reported by the local genomic context database.
Genomic interval390 957-393 128 nt2 172 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span390 957-393 798 ntGCF_003467625::NZ_QSHH01000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467625::NZ_QSHH01000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSHH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span390 957-393 798 nt2 842 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
390 957 nt393 798 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW865_RS01730GCF_003467625#DW865_RS01730
HKClassicCurrent focus
390 957-393 128 nt · Reverse (-)
DW865_RS01735GCF_003467625#DW865_RS01735
RROmpR
393 100-393 798 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467625#DW865_RS01730The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0727225
Simplified PFAM architecture for HKOC_0727225
PFAM domain coverage: 161 / 723 aa (22.3%)
1 aa723 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[492-556] | HATPase_c[604-699]
- Domain count: 2
- Matched identifier: HKOC_0727225
- Positioned domains: HisKA 492-556 ; HATPase_c 604-699
Cluster members and taxonomy
Representative gene: GCF_003467625#DW865_RS01730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003467625
AssemblyASM346762v1 · Scaffoldhaploid
Genome composition3 080 758 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 73 · HK 35 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key