1 GGDEF#1
142-285 aa · 144 aa · 22.2% of protein
Raw token
GGDEF:142:4.83e-32:285:156:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW912_RS06545
Response regulator, RpfG family
Agathobacter rectalis · GCF_003467275
ClassRRTypeRpfGLength648 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003467275#DW912_RS06545Stable P2CS identifier used across views.
GenomeGCF_003467275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length648 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage367 / 648 aa (56.6%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa648 aa
Domain-by-domain annotation3 items
2 Response_reg#2
308-420 aa · 113 aa · 17.4% of protein
Raw token
Response_reg:308:8.87e-25:420:114:1113 HD#3
492-601 aa · 110 aa · 17.0% of protein
Raw token
HD:492:0.00000000000000781:601:110:110- Raw architecture: GGDEF:142:4.83e-32:285:156:160#Response_reg:308:8.87e-25:420:114:111#HD:492:0.00000000000000781:601:110:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003467275::NZ_QSFZ01000005.1::G00044
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span144121-146067Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW912_06545RefSeq proteinWP_118332594.1
Context group ID
GCF_003467275::NZ_QSFZ01000005.1::G00044Context members
DW912_RS06545
Partner locus tags
DW912_RS06545
Partner old locus tags
DW912_06545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118332594.1Primary protein accession used for annex mappings.
UniProt accessionA0A413U5R8Primary UniProt accession resolved in the annex database.
UniProt IDA0A413U5R8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW912_RS06545Primary locus identifier stored in the genes table.
Old locus tagDW912_06545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSFZ01000005.1Sequence record reported by the local genomic context database.
Genomic interval144 121-146 067 nt1 947 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span144 121-146 067 ntGCF_003467275::NZ_QSFZ01000005.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467275::NZ_QSFZ01000005.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSFZ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span144 121-146 067 nt1 947 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 121 nt146 067 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW912_RS06545GCF_003467275#DW912_RS06545
RRRpfGCurrent focus
144 121-146 067 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467275#DW912_RS06545The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0036431
Simplified PFAM architecture for RROC_0036431
PFAM domain coverage: 379 / 648 aa (58.5%)
1 aa648 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[143-285] | Response_reg[308-420] | HD_5[499-621]
- Domain count: 3
- Matched identifier: RROC_0036431
- Positioned domains: GGDEF 143-285 ; GGDEF 143-285 ; Response_reg 308-420 ; Response_reg 308-420 ; HD_5 499-621 ; HD_5 499-621
Cluster members and taxonomy
Representative gene: GCF_003467275#DW912_RS06545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003467275
AssemblyASM346727v1 · Scaffoldhaploid
Genome composition3 361 628 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 82 · HK 33 · RR 47CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key