1 Response_reg#1
6-110 aa · 105 aa · 44.9% of protein
Raw token
Response_reg:6:2.52e-34:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW912_RS00965
Response regulator OmpR family
Agathobacter rectalis · GCF_003467275
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003467275#DW912_RS00965Stable P2CS identifier used across views.
GenomeGCF_003467275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 234 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:152:6.34e-35:228:77:77- Raw architecture: Response_reg:6:2.52e-34:110:106:111#Trans_reg_C:152:6.34e-35:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003467275::NZ_QSFZ01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span197359-199474Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW912_00965RefSeq proteinWP_118332482.1
Context group ID
GCF_003467275::NZ_QSFZ01000001.1::G00005Context members
DW912_RS00960DW912_RS00965
Partner locus tags
DW912_RS00960DW912_RS00965
Partner old locus tags
DW912_00960DW912_00965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118332482.1Primary protein accession used for annex mappings.
UniProt accessionA0A413U8L9Primary UniProt accession resolved in the annex database.
UniProt IDA0A413U8L9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW912_RS00965Primary locus identifier stored in the genes table.
Old locus tagDW912_00965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSFZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval198 770-199 474 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span197 359-199 474 ntGCF_003467275::NZ_QSFZ01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003467275::NZ_QSFZ01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSFZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span197 359-199 474 nt2 116 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
197 359 nt199 474 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW912_RS00960GCF_003467275#DW912_RS00960
HKClassic
197 359-198 768 nt · Reverse (-)
DW912_RS00965GCF_003467275#DW912_RS00965
RROmpRCurrent focus
198 770-199 474 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467275#DW912_RS00965The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055567
Simplified PFAM architecture for RROC_1055567
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1055567
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_003467275#DW912_RS00965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003467275
AssemblyASM346727v1 · Scaffoldhaploid
Genome composition3 361 628 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 82 · HK 33 · RR 47CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key