1 Response_reg#1
4-114 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:4:2.17e-28:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD79_RS00600
Response regulator OmpR family
Hungatella hathewayi · GCF_003466285
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466285#DXD79_RS00600Stable P2CS identifier used across views.
GenomeGCF_003466285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:146:2.83e-24:219:76:77- Raw architecture: Response_reg:4:2.17e-28:114:111:111#Trans_reg_C:146:2.83e-24:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466285::NZ_QSON01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span136550-138321Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD79_00600RefSeq proteinWP_117630418.1
Context group ID
GCF_003466285::NZ_QSON01000001.1::G00007Context members
DXD79_RS00595DXD79_RS00600
Partner locus tags
DXD79_RS00595DXD79_RS00600
Partner old locus tags
DXD79_00595DXD79_00600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630418.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PET5Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PET5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD79_RS00600Primary locus identifier stored in the genes table.
Old locus tagDXD79_00600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSON01000001.1Sequence record reported by the local genomic context database.
Genomic interval137 650-138 321 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span136 550-138 321 ntGCF_003466285::NZ_QSON01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466285::NZ_QSON01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSON01000001.1All displayed genes belong to this local TCS context.
Neighborhood span136 550-138 321 nt1 772 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 550 nt138 321 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD79_RS00595GCF_003466285#DXD79_RS00595
HKClassic
136 550-137 653 nt · Reverse (-)
DXD79_RS00600GCF_003466285#DXD79_RS00600
RROmpRCurrent focus
137 650-138 321 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS03235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600123
Simplified PFAM architecture for RROC_1600123
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1600123
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS03235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003466285
AssemblyASM346628v1 · Scaffoldhaploid
Genome composition7 637 491 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 297 · HK 148 · RR 146CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key