1 HisKA#1
325-391 aa · 67 aa · 9.4% of protein
Raw token
HisKA:325:6.08e-17:391:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD82_RS14475
Histidine kinase, Hybrid
Dorea formicigenerans · GCF_003466265
ClassHKTypeHybridLength716 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003466265#DXD82_RS14475Stable P2CS identifier used across views.
GenomeGCF_003466265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length716 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 716 aa (42.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa716 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
438-556 aa · 119 aa · 16.6% of protein
Raw token
HATPase_c:438:5.02e-29:556:119:1093 Response_reg#3
584-700 aa · 117 aa · 16.3% of protein
Raw token
Response_reg:584:9.22e-27:700:117:111- Raw architecture: HisKA:325:6.08e-17:391:67:64#HATPase_c:438:5.02e-29:556:119:109#Response_reg:584:9.22e-27:700:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003466265::NZ_QSOK01000030.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9979-12129Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD82_14470RefSeq proteinWP_117494934.1
Context group ID
GCF_003466265::NZ_QSOK01000030.1::G00034Context members
DXD82_RS14475
Partner locus tags
DXD82_RS14475
Partner old locus tags
DXD82_14470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117494934.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4F6S2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4F6S2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD82_RS14475Primary locus identifier stored in the genes table.
Old locus tagDXD82_14470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOK01000030.1Sequence record reported by the local genomic context database.
Genomic interval9 979-12 129 nt2 151 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 979-12 129 ntGCF_003466265::NZ_QSOK01000030.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466265::NZ_QSOK01000030.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOK01000030.1All displayed genes belong to this local TCS context.
Neighborhood span9 979-12 129 nt2 151 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 979 nt12 129 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD82_RS14475GCF_003466265#DXD82_RS14475
HKHybridCurrent focus
9 979-12 129 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS06160Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0740859
Simplified PFAM architecture for HKOC_0740859
PFAM domain coverage: 301 / 716 aa (42.0%)
1 aa716 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[325-391] | HATPase_c[438-555] | Response_reg[584-699]
- Domain count: 3
- Matched identifier: HKOC_0740859
- Positioned domains: HisKA 325-391 ; HATPase_c 438-555 ; Response_reg 584-699
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS06160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003466265
AssemblyASM346626v1 · Scaffoldhaploid
Genome composition3 119 219 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key