1 HisKA#1
151-217 aa · 67 aa · 12.6% of protein
Raw token
HisKA:151:2.48e-16:217:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD82_RS11920
Histidine kinase, Hybrid
Dorea formicigenerans · GCF_003466265
ClassHKTypeHybridLength532 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003466265#DXD82_RS11920Stable P2CS identifier used across views.
GenomeGCF_003466265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage300 / 532 aa (56.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
265-381 aa · 117 aa · 22.0% of protein
Raw token
HATPase_c:265:3.88e-27:381:118:1093 Response_reg#3
406-521 aa · 116 aa · 21.8% of protein
Raw token
Response_reg:406:8.17e-27:521:116:111- Raw architecture: HisKA:151:2.48e-16:217:67:64#HATPase_c:265:3.88e-27:381:118:109#Response_reg:406:8.17e-27:521:116:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003466265::NZ_QSOK01000018.1::G00017
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span6248-12457Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD82_11915RefSeq proteinWP_117495566.1
Context group ID
GCF_003466265::NZ_QSOK01000018.1::G00017Context members
DXD82_RS11915DXD82_RS11920DXD82_RS11925
Partner locus tags
DXD82_RS11915DXD82_RS11920DXD82_RS11925
Partner old locus tags
DXD82_11910DXD82_11915DXD82_11920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117495566.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4MH84Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4MH84_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD82_RS11920Primary locus identifier stored in the genes table.
Old locus tagDXD82_11915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOK01000018.1Sequence record reported by the local genomic context database.
Genomic interval7 804-9 402 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 248-12 457 ntGCF_003466265::NZ_QSOK01000018.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466265::NZ_QSOK01000018.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOK01000018.1All displayed genes belong to this local TCS context.
Neighborhood span6 248-12 457 nt6 210 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 248 nt12 457 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXD82_RS11915GCF_003466265#DXD82_RS11915
RRRpfG
6 248-7 738 nt · Forward (+)
DXD82_RS11920GCF_003466265#DXD82_RS11920
HKHybridCurrent focus
7 804-9 402 nt · Forward (+)
DXD82_RS11925GCF_003466265#DXD82_RS11925
HKHybrid
9 584-12 457 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS11750Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1349214
Simplified PFAM architecture for HKOC_1349214
PFAM domain coverage: 298 / 532 aa (56.0%)
1 aa532 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[151-217] | HATPase_c[267-381] | Response_reg[406-521]
- Domain count: 3
- Matched identifier: HKOC_1349214
- Positioned domains: HisKA 151-217 ; HATPase_c 267-381 ; Response_reg 406-521
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS11750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003466265
AssemblyASM346626v1 · Scaffoldhaploid
Genome composition3 119 219 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key