1 sCache_like#1
70-129 aa · 60 aa · 13.7% of protein
Raw token
sCache_like:70:0.000000683:129:60:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD82_RS09845
Histidine kinase, Classic
Dorea formicigenerans · GCF_003466265
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003466265#DXD82_RS09845Stable P2CS identifier used across views.
GenomeGCF_003466265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 438 aa (53.9%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation3 items
2 HisKA#2
220-286 aa · 67 aa · 15.3% of protein
Raw token
HisKA:220:1.3e-16:286:67:643 HATPase_c#3
330-438 aa · 109 aa · 24.9% of protein
Raw token
HATPase_c:330:5.09e-28:438:109:109- Raw architecture: sCache_like:70:0.000000683:129:60:114#HisKA:220:1.3e-16:286:67:64#HATPase_c:330:5.09e-28:438:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003466265::NZ_QSOK01000013.1::G00011
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span30653-34417Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD82_09840RefSeq proteinWP_119225088.1
Context group ID
GCF_003466265::NZ_QSOK01000013.1::G00011Context members
DXD82_RS09840DXD82_RS09845DXD82_RS09850
Partner locus tags
DXD82_RS09840DXD82_RS09845DXD82_RS09850
Partner old locus tags
DXD82_09835DXD82_09840DXD82_09845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_119225088.1Primary protein accession used for annex mappings.
UniProt accessionA0A412KRU9Primary UniProt accession resolved in the annex database.
UniProt IDA0A412KRU9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD82_RS09845Primary locus identifier stored in the genes table.
Old locus tagDXD82_09840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOK01000013.1Sequence record reported by the local genomic context database.
Genomic interval32 279-33 595 nt1 317 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 653-34 417 ntGCF_003466265::NZ_QSOK01000013.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466265::NZ_QSOK01000013.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOK01000013.1All displayed genes belong to this local TCS context.
Neighborhood span30 653-34 417 nt3 765 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 653 nt34 417 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXD82_RS09840GCF_003466265#DXD82_RS09840
HKClassic
30 653-32 176 nt · Reverse (-)
DXD82_RS09845GCF_003466265#DXD82_RS09845
HKClassicCurrent focus
32 279-33 595 nt · Reverse (-)
DXD82_RS09850GCF_003466265#DXD82_RS09850
RROmpR
33 743-34 417 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS10210Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2094783
Simplified PFAM architecture for HKOC_2094783
PFAM domain coverage: 174 / 438 aa (39.7%)
1 aa438 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[220-286] | HATPase_c[332-438]
- Domain count: 2
- Matched identifier: HKOC_2094783
- Positioned domains: HisKA 220-286 ; HATPase_c 332-438
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS10210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003466265
AssemblyASM346626v1 · Scaffoldhaploid
Genome composition3 119 219 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key