1 HisKA#1
124-181 aa · 58 aa · 17.3% of protein
Raw token
HisKA:124:0.00000106:181:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD82_RS07665
Histidine kinase, Classic
Dorea formicigenerans · GCF_003466265
ClassHKTypeClassicLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003466265#DXD82_RS07665Stable P2CS identifier used across views.
GenomeGCF_003466265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 336 aa (47.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa336 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
226-328 aa · 103 aa · 30.7% of protein
Raw token
HATPase_c:226:1.6e-25:328:107:109- Raw architecture: HisKA:124:0.00000106:181:58:64#HATPase_c:226:1.6e-25:328:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003466265::NZ_QSOK01000009.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16880-18558Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD82_07660RefSeq proteinWP_117495135.1
Context group ID
GCF_003466265::NZ_QSOK01000009.1::G00048Context members
DXD82_RS07665DXD82_RS07670
Partner locus tags
DXD82_RS07665DXD82_RS07670
Partner old locus tags
DXD82_07660DXD82_07665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117495135.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4F4R0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4F4R0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD82_RS07665Primary locus identifier stored in the genes table.
Old locus tagDXD82_07660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOK01000009.1Sequence record reported by the local genomic context database.
Genomic interval16 880-17 890 nt1 011 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 880-18 558 ntGCF_003466265::NZ_QSOK01000009.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466265::NZ_QSOK01000009.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOK01000009.1All displayed genes belong to this local TCS context.
Neighborhood span16 880-18 558 nt1 679 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 880 nt18 558 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD82_RS07665GCF_003466265#DXD82_RS07665
HKClassicCurrent focus
16 880-17 890 nt · Reverse (-)
DXD82_RS07670GCF_003466265#DXD82_RS07670
RROmpR
17 887-18 558 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS08490Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2846809
Simplified PFAM architecture for HKOC_2846809
PFAM domain coverage: 160 / 336 aa (47.6%)
1 aa336 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-180] | HATPase_c[227-329]
- Domain count: 2
- Matched identifier: HKOC_2846809
- Positioned domains: HisKA 124-180 ; HATPase_c 227-329
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS08490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003466265
AssemblyASM346626v1 · Scaffoldhaploid
Genome composition3 119 219 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key