1 SBP_bac_3#1
53-260 aa · 208 aa · 29.4% of protein
Raw token
SBP_bac_3:53:2.96e-35:260:224:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD82_RS07085
Histidine kinase, Hybrid
Dorea formicigenerans · GCF_003466265
ClassHKTypeHybridLength708 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003466265#DXD82_RS07085Stable P2CS identifier used across views.
GenomeGCF_003466265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length708 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage511 / 708 aa (72.2%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa708 aa
Domain-by-domain annotation4 items
2 HisKA#2
331-397 aa · 67 aa · 9.5% of protein
Raw token
HisKA:331:2.2e-17:397:67:643 HATPase_c#3
444-562 aa · 119 aa · 16.8% of protein
Raw token
HATPase_c:444:2.28e-29:562:119:1094 Response_reg#4
584-700 aa · 117 aa · 16.5% of protein
Raw token
Response_reg:584:2.68e-29:700:117:111- Raw architecture: SBP_bac_3:53:2.96e-35:260:224:224#HisKA:331:2.2e-17:397:67:64#HATPase_c:444:2.28e-29:562:119:109#Response_reg:584:2.68e-29:700:117:111
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003466265::NZ_QSOK01000008.1::G00047
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span25133-27259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD82_07080RefSeq proteinWP_181996089.1
Context group ID
GCF_003466265::NZ_QSOK01000008.1::G00047Context members
DXD82_RS07085
Partner locus tags
DXD82_RS07085
Partner old locus tags
DXD82_07080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181996089.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD82_RS07085Primary locus identifier stored in the genes table.
Old locus tagDXD82_07080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSOK01000008.1Sequence record reported by the local genomic context database.
Genomic interval25 133-27 259 nt2 127 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 133-27 259 ntGCF_003466265::NZ_QSOK01000008.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466265::NZ_QSOK01000008.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSOK01000008.1All displayed genes belong to this local TCS context.
Neighborhood span25 133-27 259 nt2 127 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 133 nt27 259 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD82_RS07085GCF_003466265#DXD82_RS07085
HKHybridCurrent focus
25 133-27 259 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS07485Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0745914
Simplified PFAM architecture for HKOC_0745914
PFAM domain coverage: 509 / 713 aa (71.4%)
1 aa713 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[58-265] | HisKA[336-402] | HATPase_c[450-566] | Response_reg[589-705]
- Domain count: 4
- Matched identifier: HKOC_0745914
- Positioned domains: SBP_bac_3 58-265 ; HisKA 336-402 ; HATPase_c 450-566 ; Response_reg 589-705
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS07485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003466265
AssemblyASM346626v1 · Scaffoldhaploid
Genome composition3 119 219 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 88 · HK 48 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key