1 Response_reg#1
1-96 aa · 96 aa · 45.3% of protein
Raw token
Response_reg:1:0.000000000264:96:96:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV18_RS01370
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_003466105
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003466105#DWV18_RS01370Stable P2CS identifier used across views.
GenomeGCF_003466105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 212 aa (71.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
148-202 aa · 55 aa · 25.9% of protein
Raw token
HTH_LUXR:148:1.43e-19:202:55:58- Raw architecture: Response_reg:1:0.000000000264:96:96:111#HTH_LUXR:148:1.43e-19:202:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003466105::NZ_QSBW01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span338021-338659Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV18_01365RefSeq proteinWP_259318762.1
Context group ID
GCF_003466105::NZ_QSBW01000001.1::G00004Context members
DWV18_RS01370
Partner locus tags
DWV18_RS01370
Partner old locus tags
DWV18_01365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_259318762.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV18_RS01370Primary locus identifier stored in the genes table.
Old locus tagDWV18_01365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSBW01000001.1Sequence record reported by the local genomic context database.
Genomic interval338 021-338 659 nt639 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span338 021-338 659 ntGCF_003466105::NZ_QSBW01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466105::NZ_QSBW01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSBW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span338 021-338 659 nt639 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
338 021 nt338 659 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWV18_RS01370GCF_003466105#DWV18_RS01370
RRNarLCurrent focus
338 021-338 659 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466105#DWV18_RS01370The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1990382
Simplified PFAM architecture for RROC_1990382
PFAM domain coverage: 155 / 212 aa (73.1%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-102] | GerE[149-202]
- Domain count: 2
- Matched identifier: RROC_1990382
- Positioned domains: Response_reg 2-102 ; Response_reg 2-102 ; GerE 149-202 ; GerE 149-202
Cluster members and taxonomy
Representative gene: GCF_003466105#DWV18_RS01370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003466105
AssemblyASM346610v1 · Scaffoldhaploid
Genome composition2 185 103 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 10 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key