1 HisKA#1
203-268 aa · 66 aa · 15.5% of protein
Raw token
HisKA:203:0.000000000000545:268:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV51_RS03235
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003465525
ClassHKTypeClassicLength427 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003465525#DWV51_RS03235Stable P2CS identifier used across views.
GenomeGCF_003465525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length427 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 427 aa (41.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa427 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
315-425 aa · 111 aa · 26.0% of protein
Raw token
HATPase_c:315:2.39e-25:425:111:109- Raw architecture: HisKA:203:0.000000000000545:268:66:64#HATPase_c:315:2.39e-25:425:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003465525::NZ_QSAW01000002.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4876-6839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV51_03240RefSeq proteinWP_117948364.1
Context group ID
GCF_003465525::NZ_QSAW01000002.1::G00019Context members
DWV51_RS03235DWV51_RS03240
Partner locus tags
DWV51_RS03235DWV51_RS03240
Partner old locus tags
DWV51_03240DWV51_03245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117948364.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV51_RS03235Primary locus identifier stored in the genes table.
Old locus tagDWV51_03240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSAW01000002.1Sequence record reported by the local genomic context database.
Genomic interval4 876-6 159 nt1 284 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 876-6 839 ntGCF_003465525::NZ_QSAW01000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003465525::NZ_QSAW01000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSAW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span4 876-6 839 nt1 964 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 876 nt6 839 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWV51_RS03235GCF_003465525#DWV51_RS03235
HKClassicCurrent focus
4 876-6 159 nt · Reverse (-)
DWV51_RS03240GCF_003465525#DWV51_RS03240
RROmpR
6 156-6 839 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003465525#DWV51_RS03235The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2200905
Simplified PFAM architecture for HKOC_2200905
PFAM domain coverage: 175 / 427 aa (41.0%)
1 aa427 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[204-268] | HATPase_c[315-424]
- Domain count: 2
- Matched identifier: HKOC_2200905
- Positioned domains: HisKA 204-268 ; HATPase_c 315-424
Cluster members and taxonomy
Representative gene: GCF_003465525#DWV51_RS03235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003465525
AssemblyASM346552v1 · Scaffoldhaploid
Genome composition3 126 281 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 62 · HK 29 · RR 31CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key