1 HisKA#1
184-249 aa · 66 aa · 14.3% of protein
Raw token
HisKA:184:0.00000000000401:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWV80_RS05240
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_003464925
ClassHKTypeClassicLength461 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003464925#DWV80_RS05240Stable P2CS identifier used across views.
GenomeGCF_003464925Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length461 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 461 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 24.5% of protein
Raw token
HATPase_c:312:4.21e-29:424:113:109- Raw architecture: HisKA:184:0.00000000000401:249:66:64#HATPase_c:312:4.21e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003464925::NZ_QSAC01000004.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132598-134768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWV80_05235RefSeq proteinWP_117784270.1
Context group ID
GCF_003464925::NZ_QSAC01000004.1::G00014Context members
DWV80_RS05240DWV80_RS05245
Partner locus tags
DWV80_RS05240DWV80_RS05245
Partner old locus tags
DWV80_05235DWV80_05240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117784270.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWV80_RS05240Primary locus identifier stored in the genes table.
Old locus tagDWV80_05235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSAC01000004.1Sequence record reported by the local genomic context database.
Genomic interval132 598-133 983 nt1 386 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span132 598-134 768 ntGCF_003464925::NZ_QSAC01000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003464925::NZ_QSAC01000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSAC01000004.1All displayed genes belong to this local TCS context.
Neighborhood span132 598-134 768 nt2 171 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 598 nt134 768 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWV80_RS05240GCF_003464925#DWV80_RS05240
HKClassicCurrent focus
132 598-133 983 nt · Forward (+)
DWV80_RS05245GCF_003464925#DWV80_RS05245
RROmpR
134 064-134 768 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003464925#DWV80_RS05240The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1823589
Simplified PFAM architecture for HKOC_1823589
PFAM domain coverage: 177 / 461 aa (38.4%)
1 aa461 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1823589
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_003464925#DWV80_RS05240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003464925
AssemblyASM346492v1 · Scaffoldhaploid
Genome composition2 202 985 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 32 · HK 13 · RR 17CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key