1 Response_reg#1
4-115 aa · 112 aa · 48.1% of protein
Raw token
Response_reg:4:4.24e-36:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW07_RS18335
Response regulator OmpR family
Blautia obeum · GCF_003464645
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003464645#DWW07_RS18335Stable P2CS identifier used across views.
GenomeGCF_003464645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 233 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:1.27e-32:229:77:77- Raw architecture: Response_reg:4:4.24e-36:115:113:111#Trans_reg_C:153:1.27e-32:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003464645::NZ_QRZI01000027.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span282-1915Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW07_18360RefSeq proteinWP_096241059.1
Context group ID
GCF_003464645::NZ_QRZI01000027.1::G00031Context members
DWW07_RS18335DWW07_RS18340
Partner locus tags
DWW07_RS18335DWW07_RS18340
Partner old locus tags
DWW07_18360DWW07_18365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096241059.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H3F8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H3F8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW07_RS18335Primary locus identifier stored in the genes table.
Old locus tagDWW07_18360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRZI01000027.1Sequence record reported by the local genomic context database.
Genomic interval282-983 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span282-1 915 ntGCF_003464645::NZ_QRZI01000027.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003464645::NZ_QRZI01000027.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRZI01000027.1All displayed genes belong to this local TCS context.
Neighborhood span282-1 915 nt1 634 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
282 nt1 915 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW07_RS18335GCF_003464645#DWW07_RS18335
RROmpRCurrent focus
282-983 nt · Forward (+)
DWW07_RS18340GCF_003464645#DWW07_RS18340
HKClassic
992-1 915 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003464645#DWW07_RS18335The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1090495
Simplified PFAM architecture for RROC_1090495
PFAM domain coverage: 188 / 233 aa (80.7%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1090495
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_003464645#DWW07_RS18335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003464645
AssemblyASM346464v1 · Scaffoldhaploid
Genome composition3 911 172 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 103 · HK 54 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key