1 HAMP#1
208-277 aa · 70 aa · 11.8% of protein
Raw token
HAMP:208:0.00000000000000185:277:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA77_RS03125
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_003462895
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462895#DXA77_RS03125Stable P2CS identifier used across views.
GenomeGCF_003462895Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 593 aa (48.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation3 items
2 HisKA#2
288-357 aa · 70 aa · 11.8% of protein
Raw token
HisKA:288:2.49e-16:357:70:643 HATPase_c#3
421-568 aa · 148 aa · 25.0% of protein
Raw token
HATPase_c:421:6.32e-21:568:148:109- Raw architecture: HAMP:208:0.00000000000000185:277:70:69#HisKA:288:2.49e-16:357:70:64#HATPase_c:421:6.32e-21:568:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462895::NZ_QSBZ01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span737058-739645Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA77_03125RefSeq proteinWP_117762562.1
Context group ID
GCF_003462895::NZ_QSBZ01000001.1::G00006Context members
DXA77_RS03120DXA77_RS03125
Partner locus tags
DXA77_RS03120DXA77_RS03125
Partner old locus tags
DXA77_03120DXA77_03125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117762562.1Primary protein accession used for annex mappings.
UniProt accessionA0A6I6R1X2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6I6R1X2_BIFADDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA77_RS03125Primary locus identifier stored in the genes table.
Old locus tagDXA77_03125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSBZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval737 864-739 645 nt1 782 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span737 058-739 645 ntGCF_003462895::NZ_QSBZ01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462895::NZ_QSBZ01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSBZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span737 058-739 645 nt2 588 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
737 058 nt739 645 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA77_RS03120GCF_003462895#DXA77_RS03120
RROmpR
737 058-737 789 nt · Forward (+)
DXA77_RS03125GCF_003462895#DXA77_RS03125
HKClassicCurrent focus
737 864-739 645 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457765#DWZ00_RS03130Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1094394
Simplified PFAM architecture for HKOC_1094394
PFAM domain coverage: 269 / 593 aa (45.4%)
1 aa593 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-277] | HisKA[289-357] | HATPase_c[421-567]
- Domain count: 3
- Matched identifier: HKOC_1094394
- Positioned domains: HAMP 225-277 ; HisKA 289-357 ; HATPase_c 421-567
Cluster members and taxonomy
Representative gene: GCF_003457765#DWZ00_RS03130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_003462895
AssemblyASM346289v1 · Scaffoldhaploid
Genome composition2 142 182 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key