1 Response_reg#1
4-113 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:4:4.16e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA77_RS01545
Response regulator OmpR family
Bifidobacterium adolescentis · GCF_003462895
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462895#DXA77_RS01545Stable P2CS identifier used across views.
GenomeGCF_003462895Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:152:6.68e-33:228:77:77- Raw architecture: Response_reg:4:4.16e-38:113:111:111#Trans_reg_C:152:6.68e-33:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462895::NZ_QSBZ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span391080-393190Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA77_01545RefSeq proteinWP_085382369.1
Context group ID
GCF_003462895::NZ_QSBZ01000001.1::G00003Context members
DXA77_RS01540DXA77_RS01545
Partner locus tags
DXA77_RS01540DXA77_RS01545
Partner old locus tags
DXA77_01540DXA77_01545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_085382369.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA77_RS01545Primary locus identifier stored in the genes table.
Old locus tagDXA77_01545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSBZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval392 489-393 190 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span391 080-393 190 ntGCF_003462895::NZ_QSBZ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462895::NZ_QSBZ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSBZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span391 080-393 190 nt2 111 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
391 080 nt393 190 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA77_RS01540GCF_003462895#DXA77_RS01540
HKClassic
391 080-392 489 nt · Forward (+)
DXA77_RS01545GCF_003462895#DXA77_RS01545
RROmpRCurrent focus
392 489-393 190 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108165#LMG18897_RS01685Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1087601
Simplified PFAM architecture for RROC_1087601
PFAM domain coverage: 184 / 233 aa (79.0%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[154-227]
- Domain count: 2
- Matched identifier: RROC_1087601
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 154-227 ; Trans_reg_C 154-227
Cluster members and taxonomy
Representative gene: GCF_002108165#LMG18897_RS01685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_003462895
AssemblyASM346289v1 · Scaffoldhaploid
Genome composition2 142 182 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key