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Gene detail

DWW65_RS01935

Histidine kinase, Hybrid

Coprococcus comes · GCF_003462725

Open genomeOpen selected clusterRefSeqUniProt
ClassHKTypeHybridLength955 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003462725#DWW65_RS01935Stable P2CS identifier used across views.
GenomeGCF_003462725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Selected clusterHKOC_0322163Run 6 · 1 sequences · id 100% · cov 80% · representative
External referencesWP_117823109.1 · A0A412TB89 · MIST4 DWW65_RS01935RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

PBPbSBP_bac_3HisKAHATPase_cResponse_reg
Protein length955 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage728 / 955 aa (76.2%)Merged over positioned domains only.
Domain description1 PBPb,1 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Domain view
NativeBiotite-like
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa955 aa
PBPb: 44-260 aa (217 aa)1SBP_bac_3: 282-486 aa (205 aa)2HisKA: 571-639 aa (69 aa)3HATPase_c: 685-803 aa (119 aa)4Response_reg: 829-946 aa (118 aa)5
Domain-by-domain annotation5 items
1 PBPb#1
44-260 aa · 217 aa · 22.7% of protein
Raw tokenPBPb:44:4.17e-30:260:228:219
2 SBP_bac_3#2
282-486 aa · 205 aa · 21.5% of protein
Raw tokenSBP_bac_3:282:0.00000000000041:486:220:224
3 HisKA#3
571-639 aa · 69 aa · 7.2% of protein
Raw tokenHisKA:571:1.11e-18:639:69:64
4 HATPase_c#4
685-803 aa · 119 aa · 12.5% of protein
Raw tokenHATPase_c:685:4.37e-28:803:119:109
5 Response_reg#5
829-946 aa · 118 aa · 12.4% of protein
Raw tokenResponse_reg:829:2.66e-30:946:118:111
  • Raw architecture: PBPb:44:4.17e-30:260:228:219#SBP_bac_3:282:0.00000000000041:486:220:224#HisKA:571:1.11e-18:639:69:64#HATPase_c:685:4.37e-28:803:119:109#Response_reg:829:2.66e-30:946:118:111
  • Domain description: 1 PBPb,1 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
  • TM description: N/A
  • TMPRED source: No TMPRED file loaded
  • TMPRED segments: N/A
  • Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labeltriadGCF_003462725::NZ_QRXY01000002.1::G00019
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span62639-68490Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW65_01935RefSeq proteinWP_117823109.1
Context group IDGCF_003462725::NZ_QRXY01000002.1::G00019
Context members
DWW65_RS01925DWW65_RS01930DWW65_RS01935
Partner locus tags
DWW65_RS01925DWW65_RS01930DWW65_RS01935
Partner old locus tags
DWW65_01925DWW65_01930DWW65_01935
Partner protein IDs
WP_117823107.1WP_243006394.1WP_117823109.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_117823109.1Primary protein accession used for annex mappings.
UniProt accessionA0A412TB89Primary UniProt accession resolved in the annex database.
UniProt IDA0A412TB89_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
Open RefSeqOpen UniProt accession
GO terms
GO:0005886GO:0005524GO:0000155

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagDWW65_RS01935Primary locus identifier stored in the genes table.
Old locus tagDWW65_01935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXY01000002.1Sequence record reported by the local genomic context database.
Genomic interval65 623-68 490 nt2 868 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 639-68 490 ntGCF_003462725::NZ_QRXY01000002.1::G00019
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Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_003462725::NZ_QRXY01000002.1::G00019
Graphic view
CompactBiotite-like
Zoom
Full windowFocus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXY01000002.1All displayed genes belong to this local TCS context.
Neighborhood span62 639-68 490 nt5 852 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 639 nt68 490 nt
+-DWW65_RS01925DWW65_RS01930DWW65_RS01935
Neighborhood gene cards

3 genes in the current local neighborhood.

DWW65_RS01925GCF_003462725#DWW65_RS01925
HKHybrid

62 639-64 795 nt · Forward (+)

Old locus DWW65_01925RefSeq WP_117823107.1
Open gene
DWW65_RS01930GCF_003462725#DWW65_RS01930
RRunclassified

64 840-65 586 nt · Forward (+)

Old locus DWW65_01930RefSeq WP_243006394.1
Open gene
DWW65_RS01935GCF_003462725#DWW65_RS01935
HKHybridCurrent focus

65 623-68 490 nt · Forward (+)

Old locus DWW65_01935RefSeq WP_117823109.1
Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster
HKOC_0322163HK
Run 61 sequencesid 100%cov 80%
PFAM SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
Current gene is the representative sequence.
Selected clusterHKOC_0322163Run 6 · HK · 1 sequences
Representative sequenceGCF_003462725#DWW65_RS01935The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
Open in cluster search

PFAM architecture for HKOC_0322163

Simplified PFAM architecture for HKOC_0322163

PFAM domain coverage: 707 / 955 aa (74.0%)

1 aa955 aa
SBP_bac_3: 52-260 aaSBP_bac_3SBP_bac_3: 291-486 aaSBP_bac_3HisKA: 571-639 aaHisKAHATPase_c: 686-801 aaHATPase_cResponse_reg: 829-945 aaResponse_reg
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
  • Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
  • Raw architecture: SBP_bac_3[52-260] | SBP_bac_3[291-486] | HisKA[571-639] | HATPase_c[686-801] | Response_reg[829-945]
  • Domain count: 5
  • Matched identifier: HKOC_0322163
  • Positioned domains: SBP_bac_3 52-260 ; SBP_bac_3 291-486 ; HisKA 571-639 ; HATPase_c 686-801 ; Response_reg 829-945
Cluster members and taxonomy
Visualization
SankeyMember list

Representative gene: GCF_003462725#DWW65_RS01935

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 410 072 · GCF_003462725
AssemblyASM346272v1 · Scaffoldhaploid
Genome composition3 424 883 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Open genomeSearch genes in genomeSearch HK genesNCBI assembly files

Related genes

Preview from the same derived genome key

10 preview genes

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Search all genome genesSearch HK genes
DWW65_RS01930GCF_003462725#DWW65_RS01930
RRunclassified

RR gene found in the same genome-level preview.

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