1 HAMP#1
244-312 aa · 69 aa · 12.6% of protein
Raw token
HAMP:244:0.000000812:312:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW746_RS14160
Histidine kinase, Classic
Blautia sp. AM28-36 · GCF_003462165
ClassHKTypeClassicLength548 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462165#DW746_RS14160Stable P2CS identifier used across views.
GenomeGCF_003462165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length548 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 548 aa (46.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa548 aa
Domain-by-domain annotation3 items
2 His_kinase#2
327-406 aa · 80 aa · 14.6% of protein
Raw token
His_kinase:327:4.39e-30:406:80:803 HATPase_c#3
425-530 aa · 106 aa · 19.3% of protein
Raw token
HATPase_c:425:0.00000000000343:530:107:109- Raw architecture: HAMP:244:0.000000812:312:71:69#His_kinase:327:4.39e-30:406:80:80#HATPase_c:425:0.00000000000343:530:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462165::NZ_QTYM01000014.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51310-53707Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW746_14170RefSeq proteinWP_158568575.1
Context group ID
GCF_003462165::NZ_QTYM01000014.1::G00018Context members
DW746_RS14160DW746_RS14165
Partner locus tags
DW746_RS14160DW746_RS14165
Partner old locus tags
DW746_14170DW746_14175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158568575.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW746_RS14160Primary locus identifier stored in the genes table.
Old locus tagDW746_14170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYM01000014.1Sequence record reported by the local genomic context database.
Genomic interval51 310-52 956 nt1 647 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 310-53 707 ntGCF_003462165::NZ_QTYM01000014.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462165::NZ_QTYM01000014.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYM01000014.1All displayed genes belong to this local TCS context.
Neighborhood span51 310-53 707 nt2 398 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 310 nt53 707 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW746_RS14160GCF_003462165#DW746_RS14160
HKClassicCurrent focus
51 310-52 956 nt · Forward (+)
DW746_RS14165GCF_003462165#DW746_RS14165
RRunclassified
52 934-53 707 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462165#DW746_RS14160The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1299327
Simplified PFAM architecture for HKOC_1299327
PFAM domain coverage: 182 / 548 aa (33.2%)
1 aa548 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[328-405] | HATPase_c[428-531]
- Domain count: 2
- Matched identifier: HKOC_1299327
- Positioned domains: His_kinase 328-405 ; HATPase_c 428-531
Cluster members and taxonomy
Representative gene: GCF_003462165#DW746_RS14160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 974 · GCF_003462165
AssemblyASM346216v1 · Scaffoldhaploid
Genome composition3 801 735 bp · 47,0% GCBlautia sp. AM28-36
Signal transduction countsGenes 102 · HK 51 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key