1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:4.68e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY63_RS00030
Response regulator OmpR family
Blautia sp. AF26-2 · GCF_003460955
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460955#DWY63_RS00030Stable P2CS identifier used across views.
GenomeGCF_003460955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 227 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-224 aa · 78 aa · 34.4% of protein
Raw token
Trans_reg_C:147:1.03e-28:224:78:77- Raw architecture: Response_reg:4:4.68e-32:113:111:111#Trans_reg_C:147:1.03e-28:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460955::NZ_QTWD01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3647-5575Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY63_00030RefSeq proteinWP_117800633.1
Context group ID
GCF_003460955::NZ_QTWD01000001.1::G00001Context members
DWY63_RS00030DWY63_RS00035
Partner locus tags
DWY63_RS00030DWY63_RS00035
Partner old locus tags
DWY63_00030DWY63_00035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117800633.1Primary protein accession used for annex mappings.
UniProt accessionA0A3R6A6N1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3R6A6N1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY63_RS00030Primary locus identifier stored in the genes table.
Old locus tagDWY63_00030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTWD01000001.1Sequence record reported by the local genomic context database.
Genomic interval3 647-4 330 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 647-5 575 ntGCF_003460955::NZ_QTWD01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460955::NZ_QTWD01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTWD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 647-5 575 nt1 929 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 647 nt5 575 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY63_RS00030GCF_003460955#DWY63_RS00030
RROmpRCurrent focus
3 647-4 330 nt · Forward (+)
DWY63_RS00035GCF_003460955#DWY63_RS00035
HKClassic
4 340-5 575 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460955#DWY63_RS00030The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1366853
Simplified PFAM architecture for RROC_1366853
PFAM domain coverage: 186 / 227 aa (81.9%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1366853
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_003460955#DWY63_RS00030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 966 · GCF_003460955
AssemblyASM346095v1 · Scaffoldhaploid
Genome composition3 822 398 bp · 47,0% GCBlautia sp. AF26-2
Signal transduction countsGenes 99 · HK 49 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key