1 HisKA#1
55-124 aa · 70 aa · 25.4% of protein
Raw token
HisKA:55:0.00000000206:124:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA55_RS17995
Histidine kinase, Classic
Blautia sp. OF03-13 · GCF_003460685
ClassHKTypeClassicLength276 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460685#DXA55_RS17995Stable P2CS identifier used across views.
GenomeGCF_003460685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length276 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 276 aa (62.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa276 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
170-271 aa · 102 aa · 37.0% of protein
Raw token
HATPase_c:170:2.78e-24:271:103:109- Raw architecture: HisKA:55:0.00000000206:124:70:64#HATPase_c:170:2.78e-24:271:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460685::NZ_QTVR01000038.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7378-9359Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003460685::NZ_QTVR01000038.1::G00033Context members
DXA55_RS17995DXA55_RS16300
Partner locus tags
DXA55_RS17995DXA55_RS16300
Partner old locus tags
DXA55_16325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330415358.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA55_RS17995Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QTVR01000038.1Sequence record reported by the local genomic context database.
Genomic interval7 378-8 208 nt831 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 378-9 359 ntGCF_003460685::NZ_QTVR01000038.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460685::NZ_QTVR01000038.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVR01000038.1All displayed genes belong to this local TCS context.
Neighborhood span7 378-9 359 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 378 nt9 359 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA55_RS17995GCF_003460685#DXA55_RS17995
HKClassicCurrent focus
7 378-8 208 nt · Reverse (-)
DXA55_RS16300GCF_003460685#DXA55_RS16300
RROmpR
8 685-9 359 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS17995The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2903986
Simplified PFAM architecture for HKOC_2903986
PFAM domain coverage: 171 / 276 aa (62.0%)
1 aa276 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[56-123] | HATPase_c[170-272]
- Domain count: 2
- Matched identifier: HKOC_2903986
- Positioned domains: HisKA 56-123 ; HATPase_c 170-272
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS17995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 980 · GCF_003460685
AssemblyASM346068v1 · Contighaploid
Genome composition3 545 221 bp · 47,0% GCBlautia sp. OF03-13
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key