1 HisKA#1
345-411 aa · 67 aa · 9.3% of protein
Raw token
HisKA:345:5.59e-16:411:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA55_RS01150
Histidine kinase, Hybrid
Blautia sp. OF03-13 · GCF_003460685
ClassHKTypeHybridLength720 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460685#DXA55_RS01150Stable P2CS identifier used across views.
GenomeGCF_003460685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length720 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 720 aa (41.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa720 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
463-576 aa · 114 aa · 15.8% of protein
Raw token
HATPase_c:463:3.39e-27:576:114:1093 Response_reg#3
599-715 aa · 117 aa · 16.3% of protein
Raw token
Response_reg:599:3.78e-30:715:117:111- Raw architecture: HisKA:345:5.59e-16:411:67:64#HATPase_c:463:3.39e-27:576:114:109#Response_reg:599:3.78e-30:715:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460685::NZ_QTVR01000001.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span252284-254446Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA55_01150RefSeq proteinWP_117812828.1
Context group ID
GCF_003460685::NZ_QTVR01000001.1::G00001Context members
DXA55_RS01150
Partner locus tags
DXA55_RS01150
Partner old locus tags
DXA55_01150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117812828.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA55_RS01150Primary locus identifier stored in the genes table.
Old locus tagDXA55_01150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVR01000001.1Sequence record reported by the local genomic context database.
Genomic interval252 284-254 446 nt2 163 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span252 284-254 446 ntGCF_003460685::NZ_QTVR01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460685::NZ_QTVR01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span252 284-254 446 nt2 163 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
252 284 nt254 446 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA55_RS01150GCF_003460685#DXA55_RS01150
HKHybridCurrent focus
252 284-254 446 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS01150The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0732786
Simplified PFAM architecture for HKOC_0732786
PFAM domain coverage: 297 / 720 aa (41.3%)
1 aa720 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-411] | HATPase_c[463-575] | Response_reg[599-715]
- Domain count: 3
- Matched identifier: HKOC_0732786
- Positioned domains: HisKA 345-411 ; HATPase_c 463-575 ; Response_reg 599-715
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS01150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 980 · GCF_003460685
AssemblyASM346068v1 · Contighaploid
Genome composition3 545 221 bp · 47,0% GCBlautia sp. OF03-13
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key