1 Response_reg#1
7-98 aa · 92 aa · 71.3% of protein
Raw token
Response_reg:7:0.00000772:98:92:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA55_RS16455
Response regulator, CheY family
Blautia sp. OF03-13 · GCF_003460685
ClassRRTypeCheYLength129 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460685#DXA55_RS16455Stable P2CS identifier used across views.
GenomeGCF_003460685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length129 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage92 / 129 aa (71.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa129 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:0.00000772:98:92:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460685::NZ_QTVR01000042.1::G00040
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3580-3969Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA55_16480RefSeq proteinWP_117509808.1
Context group ID
GCF_003460685::NZ_QTVR01000042.1::G00040Context members
DXA55_RS16455
Partner locus tags
DXA55_RS16455
Partner old locus tags
DXA55_16480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117509808.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA55_RS16455Primary locus identifier stored in the genes table.
Old locus tagDXA55_16480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVR01000042.1Sequence record reported by the local genomic context database.
Genomic interval3 580-3 969 nt390 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 580-3 969 ntGCF_003460685::NZ_QTVR01000042.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460685::NZ_QTVR01000042.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVR01000042.1All displayed genes belong to this local TCS context.
Neighborhood span3 580-3 969 nt390 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 580 nt3 969 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA55_RS16455GCF_003460685#DXA55_RS16455
RRCheYCurrent focus
3 580-3 969 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS07790Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2332346
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS07790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 980 · GCF_003460685
AssemblyASM346068v1 · Contighaploid
Genome composition3 545 221 bp · 47,0% GCBlautia sp. OF03-13
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key