1 PAS_3#1
360-426 aa · 67 aa · 6.8% of protein
Raw token
PAS_3:360:0.00000261:426:72:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA55_RS13865
Histidine kinase, Hybrid
Blautia sp. OF03-13 · GCF_003460685
ClassHKTypeHybridLength982 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460685#DXA55_RS13865Stable P2CS identifier used across views.
GenomeGCF_003460685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length982 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage484 / 982 aa (49.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa982 aa
Domain-by-domain annotation5 items
2 HisKA#2
470-536 aa · 67 aa · 6.8% of protein
Raw token
HisKA:470:2.05e-18:536:67:643 HATPase_c#3
584-701 aa · 118 aa · 12.0% of protein
Raw token
HATPase_c:584:1.02e-31:701:118:1094 Response_reg#4
720-833 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:720:7.47e-19:833:114:1115 Response_reg#5
861-978 aa · 118 aa · 12.0% of protein
Raw token
Response_reg:861:4.57e-31:978:118:111- Raw architecture: PAS_3:360:0.00000261:426:72:89#HisKA:470:2.05e-18:536:67:64#HATPase_c:584:1.02e-31:701:118:109#Response_reg:720:7.47e-19:833:114:111#Response_reg:861:4.57e-31:978:118:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460685::NZ_QTVR01000021.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span7107-10055Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA55_13890RefSeq proteinWP_117814469.1
Context group ID
GCF_003460685::NZ_QTVR01000021.1::G00017Context members
DXA55_RS13865
Partner locus tags
DXA55_RS13865
Partner old locus tags
DXA55_13890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117814469.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA55_RS13865Primary locus identifier stored in the genes table.
Old locus tagDXA55_13890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVR01000021.1Sequence record reported by the local genomic context database.
Genomic interval7 107-10 055 nt2 949 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 107-10 055 ntGCF_003460685::NZ_QTVR01000021.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460685::NZ_QTVR01000021.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVR01000021.1All displayed genes belong to this local TCS context.
Neighborhood span7 107-10 055 nt2 949 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 107 nt10 055 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA55_RS13865GCF_003460685#DXA55_RS13865
HKHybridCurrent focus
7 107-10 055 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS13865The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0305037
Simplified PFAM architecture for HKOC_0305037
PFAM domain coverage: 414 / 982 aa (42.2%)
1 aa982 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[470-536] | HATPase_c[584-700] | Response_reg[720-832] | Response_reg[861-977]
- Domain count: 4
- Matched identifier: HKOC_0305037
- Positioned domains: HisKA 470-536 ; HATPase_c 584-700 ; Response_reg 720-832 ; Response_reg 861-977
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS13865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 980 · GCF_003460685
AssemblyASM346068v1 · Contighaploid
Genome composition3 545 221 bp · 47,0% GCBlautia sp. OF03-13
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key