1 Response_reg#1
6-93 aa · 88 aa · 87.1% of protein
Raw token
Response_reg:6:2.53e-24:93:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA55_RS09605
Response regulator, CheY family
Blautia sp. OF03-13 · GCF_003460685
ClassRRTypeCheYLength101 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460685#DXA55_RS09605Stable P2CS identifier used across views.
GenomeGCF_003460685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length101 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage88 / 101 aa (87.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa101 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:2.53e-24:93:88:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460685::NZ_QTVR01000010.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span94902-95207Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA55_09615RefSeq proteinWP_055228394.1
Context group ID
GCF_003460685::NZ_QTVR01000010.1::G00007Context members
DXA55_RS09605
Partner locus tags
DXA55_RS09605
Partner old locus tags
DXA55_09615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055228394.1Primary protein accession used for annex mappings.
UniProt accessionA0A174PVY3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174PVY3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA55_RS09605Primary locus identifier stored in the genes table.
Old locus tagDXA55_09615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVR01000010.1Sequence record reported by the local genomic context database.
Genomic interval94 902-95 207 nt306 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span94 902-95 207 ntGCF_003460685::NZ_QTVR01000010.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460685::NZ_QTVR01000010.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVR01000010.1All displayed genes belong to this local TCS context.
Neighborhood span94 902-95 207 nt306 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 902 nt95 207 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA55_RS09605GCF_003460685#DXA55_RS09605
RRCheYCurrent focus
94 902-95 207 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS13480Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2471472
Simplified PFAM architecture for RROC_2471472
PFAM domain coverage: 90 / 101 aa (89.1%)
1 aa101 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-93]
- Domain count: 1
- Matched identifier: RROC_2471472
- Positioned domains: Response_reg 4-93 ; Response_reg 4-93
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS13480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 980 · GCF_003460685
AssemblyASM346068v1 · Contighaploid
Genome composition3 545 221 bp · 47,0% GCBlautia sp. OF03-13
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key