1 Response_reg#1
5-117 aa · 113 aa · 23.4% of protein
Raw token
Response_reg:5:6.99e-32:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA55_RS09255
Response regulator, unclassified
Blautia sp. OF03-13 · GCF_003460685
ClassRRTypeunclassifiedLength482 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460685#DXA55_RS09255Stable P2CS identifier used across views.
GenomeGCF_003460685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length482 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 482 aa (40.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa482 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
377-418 aa · 42 aa · 8.7% of protein
Raw token
HTH_AraC:377:0.0000013:418:42:423 HTH_AraC#3
430-468 aa · 39 aa · 8.1% of protein
Raw token
HTH_AraC:430:0.000000127:468:39:42- Raw architecture: Response_reg:5:6.99e-32:117:113:111#HTH_AraC:377:0.0000013:418:42:42#HTH_AraC:430:0.000000127:468:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460685::NZ_QTVR01000010.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28313-29761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA55_09265RefSeq proteinWP_022462703.1
Context group ID
GCF_003460685::NZ_QTVR01000010.1::G00005Context members
DXA55_RS09255
Partner locus tags
DXA55_RS09255
Partner old locus tags
DXA55_09265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022462703.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA55_RS09255Primary locus identifier stored in the genes table.
Old locus tagDXA55_09265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVR01000010.1Sequence record reported by the local genomic context database.
Genomic interval28 313-29 761 nt1 449 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 313-29 761 ntGCF_003460685::NZ_QTVR01000010.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460685::NZ_QTVR01000010.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVR01000010.1All displayed genes belong to this local TCS context.
Neighborhood span28 313-29 761 nt1 449 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 313 nt29 761 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA55_RS09255GCF_003460685#DXA55_RS09255
RRunclassifiedCurrent focus
28 313-29 761 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS09255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0179668
Simplified PFAM architecture for RROC_0179668
PFAM domain coverage: 190 / 482 aa (39.4%)
1 aa482 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[391-468]
- Domain count: 2
- Matched identifier: RROC_0179668
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 391-468 ; HTH_18 391-468
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS09255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 980 · GCF_003460685
AssemblyASM346068v1 · Contighaploid
Genome composition3 545 221 bp · 47,0% GCBlautia sp. OF03-13
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key