1 HisKA#1
435-502 aa · 68 aa · 10.3% of protein
Raw token
HisKA:435:0.00000000000115:502:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA55_RS07580
Histidine kinase, Classic
Blautia sp. OF03-13 · GCF_003460685
ClassHKTypeClassicLength663 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460685#DXA55_RS07580Stable P2CS identifier used across views.
GenomeGCF_003460685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 663 aa (27.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa663 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
546-658 aa · 113 aa · 17.0% of protein
Raw token
HATPase_c:546:9.72e-30:658:113:109- Raw architecture: HisKA:435:0.00000000000115:502:68:64#HATPase_c:546:9.72e-30:658:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460685::NZ_QTVR01000008.1::G00052
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span13195-15186Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA55_07590RefSeq proteinWP_117813605.1
Context group ID
GCF_003460685::NZ_QTVR01000008.1::G00052Context members
DXA55_RS07580
Partner locus tags
DXA55_RS07580
Partner old locus tags
DXA55_07590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117813605.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA55_RS07580Primary locus identifier stored in the genes table.
Old locus tagDXA55_07590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVR01000008.1Sequence record reported by the local genomic context database.
Genomic interval13 195-15 186 nt1 992 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 195-15 186 ntGCF_003460685::NZ_QTVR01000008.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460685::NZ_QTVR01000008.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVR01000008.1All displayed genes belong to this local TCS context.
Neighborhood span13 195-15 186 nt1 992 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 195 nt15 186 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA55_RS07580GCF_003460685#DXA55_RS07580
HKClassicCurrent focus
13 195-15 186 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS07580The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0864911
Simplified PFAM architecture for HKOC_0864911
PFAM domain coverage: 285 / 663 aa (43.0%)
1 aa663 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[164-270] | HisKA[436-502] | HATPase_c[547-657]
- Domain count: 3
- Matched identifier: HKOC_0864911
- Positioned domains: DUF4118 164-270 ; HisKA 436-502 ; HATPase_c 547-657
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS07580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 980 · GCF_003460685
AssemblyASM346068v1 · Contighaploid
Genome composition3 545 221 bp · 47,0% GCBlautia sp. OF03-13
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key