1 HAMP#1
97-167 aa · 71 aa · 18.2% of protein
Raw token
HAMP:97:0.000000000961:167:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA55_RS07535
Histidine kinase, Classic
Blautia sp. OF03-13 · GCF_003460685
ClassHKTypeClassicLength390 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460685#DXA55_RS07535Stable P2CS identifier used across views.
GenomeGCF_003460685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length390 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 390 aa (63.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa390 aa
Domain-by-domain annotation3 items
2 HisKA#2
172-238 aa · 67 aa · 17.2% of protein
Raw token
HisKA:172:0.000000000013:238:67:643 HATPase_c#3
280-388 aa · 109 aa · 27.9% of protein
Raw token
HATPase_c:280:8.32e-34:388:109:109- Raw architecture: HAMP:97:0.000000000961:167:71:69#HisKA:172:0.000000000013:238:67:64#HATPase_c:280:8.32e-34:388:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460685::NZ_QTVR01000008.1::G00051
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3813-4985Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA55_07545RefSeq proteinWP_117813575.1
Context group ID
GCF_003460685::NZ_QTVR01000008.1::G00051Context members
DXA55_RS07535
Partner locus tags
DXA55_RS07535
Partner old locus tags
DXA55_07545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117813575.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA55_RS07535Primary locus identifier stored in the genes table.
Old locus tagDXA55_07545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVR01000008.1Sequence record reported by the local genomic context database.
Genomic interval3 813-4 985 nt1 173 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 813-4 985 ntGCF_003460685::NZ_QTVR01000008.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460685::NZ_QTVR01000008.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVR01000008.1All displayed genes belong to this local TCS context.
Neighborhood span3 813-4 985 nt1 173 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 813 nt4 985 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA55_RS07535GCF_003460685#DXA55_RS07535
HKClassicCurrent focus
3 813-4 985 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS07535The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2528783
Simplified PFAM architecture for HKOC_2528783
PFAM domain coverage: 172 / 390 aa (44.1%)
1 aa390 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[172-237] | HATPase_c[283-388]
- Domain count: 2
- Matched identifier: HKOC_2528783
- Positioned domains: HisKA 172-237 ; HATPase_c 283-388
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS07535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 980 · GCF_003460685
AssemblyASM346068v1 · Contighaploid
Genome composition3 545 221 bp · 47,0% GCBlautia sp. OF03-13
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key