1 His_kinase#1
355-428 aa · 74 aa · 13.1% of protein
Raw token
His_kinase:355:2.26e-19:428:74:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA55_RS05745
Histidine kinase, Classic
Blautia sp. OF03-13 · GCF_003460685
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460685#DXA55_RS05745Stable P2CS identifier used across views.
GenomeGCF_003460685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 565 aa (32.2%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
451-558 aa · 108 aa · 19.1% of protein
Raw token
HATPase_c:451:0.000000108:558:114:109- Raw architecture: His_kinase:355:2.26e-19:428:74:80#HATPase_c:451:0.000000108:558:114:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460685::NZ_QTVR01000005.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span201583-204563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA55_05755RefSeq proteinWP_158565041.1
Context group ID
GCF_003460685::NZ_QTVR01000005.1::G00045Context members
DXA55_RS05740DXA55_RS05745
Partner locus tags
DXA55_RS05740DXA55_RS05745
Partner old locus tags
DXA55_05750DXA55_05755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158565041.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA55_RS05745Primary locus identifier stored in the genes table.
Old locus tagDXA55_05755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVR01000005.1Sequence record reported by the local genomic context database.
Genomic interval202 866-204 563 nt1 698 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span201 583-204 563 ntGCF_003460685::NZ_QTVR01000005.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460685::NZ_QTVR01000005.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span201 583-204 563 nt2 981 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
201 583 nt204 563 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA55_RS05740GCF_003460685#DXA55_RS05740
RRunclassified
201 583-202 869 nt · Reverse (-)
DXA55_RS05745GCF_003460685#DXA55_RS05745
HKClassicCurrent focus
202 866-204 563 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS05745The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1235619
Simplified PFAM architecture for HKOC_1235619
PFAM domain coverage: 176 / 565 aa (31.2%)
1 aa565 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[355-429] | HATPase_c[453-553]
- Domain count: 2
- Matched identifier: HKOC_1235619
- Positioned domains: His_kinase 355-429 ; HATPase_c 453-553
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS05745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 980 · GCF_003460685
AssemblyASM346068v1 · Contighaploid
Genome composition3 545 221 bp · 47,0% GCBlautia sp. OF03-13
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key