1 Response_reg#1
3-116 aa · 114 aa · 26.6% of protein
Raw token
Response_reg:3:3.77e-24:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA55_RS05740
Response regulator, unclassified
Blautia sp. OF03-13 · GCF_003460685
ClassRRTypeunclassifiedLength428 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460685#DXA55_RS05740Stable P2CS identifier used across views.
GenomeGCF_003460685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length428 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 428 aa (44.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa428 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
328-367 aa · 40 aa · 9.3% of protein
Raw token
HTH_AraC:328:0.00000131:367:40:423 HTH_AraC#3
383-418 aa · 36 aa · 8.4% of protein
Raw token
HTH_AraC:383:0.0000000046:418:36:42- Raw architecture: Response_reg:3:3.77e-24:116:114:111#HTH_AraC:328:0.00000131:367:40:42#HTH_AraC:383:0.0000000046:418:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460685::NZ_QTVR01000005.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span201583-204563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA55_05750RefSeq proteinWP_117760577.1
Context group ID
GCF_003460685::NZ_QTVR01000005.1::G00045Context members
DXA55_RS05740DXA55_RS05745
Partner locus tags
DXA55_RS05740DXA55_RS05745
Partner old locus tags
DXA55_05750DXA55_05755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117760577.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA55_RS05740Primary locus identifier stored in the genes table.
Old locus tagDXA55_05750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVR01000005.1Sequence record reported by the local genomic context database.
Genomic interval201 583-202 869 nt1 287 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span201 583-204 563 ntGCF_003460685::NZ_QTVR01000005.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460685::NZ_QTVR01000005.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span201 583-204 563 nt2 981 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
201 583 nt204 563 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA55_RS05740GCF_003460685#DXA55_RS05740
RRunclassifiedCurrent focus
201 583-202 869 nt · Reverse (-)
DXA55_RS05745GCF_003460685#DXA55_RS05745
HKClassic
202 866-204 563 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS05740The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0347153
Simplified PFAM architecture for RROC_0347153
PFAM domain coverage: 190 / 428 aa (44.4%)
1 aa428 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[342-418]
- Domain count: 2
- Matched identifier: RROC_0347153
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; HTH_18 342-418 ; HTH_18 342-418
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS05740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 980 · GCF_003460685
AssemblyASM346068v1 · Contighaploid
Genome composition3 545 221 bp · 47,0% GCBlautia sp. OF03-13
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key