1 HisKA#1
83-143 aa · 61 aa · 20.8% of protein
Raw token
HisKA:83:0.000000000115:143:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA55_RS05340
Histidine kinase, Classic
Blautia sp. OF03-13 · GCF_003460685
ClassHKTypeClassicLength293 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460685#DXA55_RS05340Stable P2CS identifier used across views.
GenomeGCF_003460685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length293 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 293 aa (49.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa293 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
194-276 aa · 83 aa · 28.3% of protein
Raw token
HATPase_c:194:0.000000000000294:276:88:109- Raw architecture: HisKA:83:0.000000000115:143:61:64#HATPase_c:194:0.000000000000294:276:88:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460685::NZ_QTVR01000005.1::G00044
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span122879-123760Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA55_05350RefSeq proteinWP_117813263.1
Context group ID
GCF_003460685::NZ_QTVR01000005.1::G00044Context members
DXA55_RS05340
Partner locus tags
DXA55_RS05340
Partner old locus tags
DXA55_05350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117813263.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA55_RS05340Primary locus identifier stored in the genes table.
Old locus tagDXA55_05350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVR01000005.1Sequence record reported by the local genomic context database.
Genomic interval122 879-123 760 nt882 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span122 879-123 760 ntGCF_003460685::NZ_QTVR01000005.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460685::NZ_QTVR01000005.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span122 879-123 760 nt882 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 879 nt123 760 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA55_RS05340GCF_003460685#DXA55_RS05340
HKClassicCurrent focus
122 879-123 760 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS05340The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2893481
Simplified PFAM architecture for HKOC_2893481
PFAM domain coverage: 142 / 293 aa (48.5%)
1 aa293 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-143] | HATPase_c[195-277]
- Domain count: 2
- Matched identifier: HKOC_2893481
- Positioned domains: HisKA 85-143 ; HATPase_c 195-277
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS05340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 980 · GCF_003460685
AssemblyASM346068v1 · Contighaploid
Genome composition3 545 221 bp · 47,0% GCBlautia sp. OF03-13
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key