1 Response_reg#1
4-113 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:4:5.33e-38:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ44_RS09980
Response regulator OmpR family
Blautia sp. AF32-4BH · GCF_003460565
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460565#DWZ44_RS09980Stable P2CS identifier used across views.
GenomeGCF_003460565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 226 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.6% of protein
Raw token
Trans_reg_C:145:9.17e-22:220:78:77- Raw architecture: Response_reg:4:5.33e-38:113:110:111#Trans_reg_C:145:9.17e-22:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460565::NZ_QTVL01000007.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23005-24854Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ44_09995RefSeq proteinWP_082424906.1
Context group ID
GCF_003460565::NZ_QTVL01000007.1::G00049Context members
DWZ44_RS09980DWZ44_RS09985
Partner locus tags
DWZ44_RS09980DWZ44_RS09985
Partner old locus tags
DWZ44_09995DWZ44_10000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_082424906.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2GCW1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2GCW1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ44_RS09980Primary locus identifier stored in the genes table.
Old locus tagDWZ44_09995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVL01000007.1Sequence record reported by the local genomic context database.
Genomic interval23 005-23 685 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 005-24 854 ntGCF_003460565::NZ_QTVL01000007.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460565::NZ_QTVL01000007.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVL01000007.1All displayed genes belong to this local TCS context.
Neighborhood span23 005-24 854 nt1 850 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 005 nt24 854 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ44_RS09980GCF_003460565#DWZ44_RS09980
RROmpRCurrent focus
23 005-23 685 nt · Forward (+)
DWZ44_RS09985GCF_003460565#DWZ44_RS09985
HKClassic
23 682-24 854 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460565#DWZ44_RS09980The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1421356
Simplified PFAM architecture for RROC_1421356
PFAM domain coverage: 184 / 226 aa (81.4%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1421356
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_003460565#DWZ44_RS09980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 967 · GCF_003460565
AssemblyASM346056v1 · Scaffoldhaploid
Genome composition3 839 213 bp · 46,5% GCBlautia sp. AF32-4BH
Signal transduction countsGenes 91 · HK 46 · RR 43CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key