1 Response_reg#1
4-116 aa · 113 aa · 21.3% of protein
Raw token
Response_reg:4:5.55e-25:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ44_RS08635
Response regulator, unclassified
Blautia sp. AF32-4BH · GCF_003460565
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460565#DWZ44_RS08635Stable P2CS identifier used across views.
GenomeGCF_003460565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 531 aa (29.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
435-475 aa · 41 aa · 7.7% of protein
Raw token
HTH_AraC:435:0.0000196:475:41:42- Raw architecture: Response_reg:4:5.55e-25:116:113:111#HTH_AraC:435:0.0000196:475:41:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460565::NZ_QTVL01000005.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span229458-232773Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ44_08650RefSeq proteinWP_117804653.1
Context group ID
GCF_003460565::NZ_QTVL01000005.1::G00042Context members
DWZ44_RS08635DWZ44_RS08640
Partner locus tags
DWZ44_RS08635DWZ44_RS08640
Partner old locus tags
DWZ44_08650DWZ44_08655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117804653.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ44_RS08635Primary locus identifier stored in the genes table.
Old locus tagDWZ44_08650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVL01000005.1Sequence record reported by the local genomic context database.
Genomic interval229 458-231 053 nt1 596 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span229 458-232 773 ntGCF_003460565::NZ_QTVL01000005.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460565::NZ_QTVL01000005.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVL01000005.1All displayed genes belong to this local TCS context.
Neighborhood span229 458-232 773 nt3 316 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
229 458 nt232 773 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ44_RS08635GCF_003460565#DWZ44_RS08635
RRunclassifiedCurrent focus
229 458-231 053 nt · Reverse (-)
DWZ44_RS08640GCF_003460565#DWZ44_RS08640
HKClassic
231 031-232 773 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460565#DWZ44_RS08635The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110023
Simplified PFAM architecture for RROC_0110023
PFAM domain coverage: 187 / 531 aa (35.2%)
1 aa531 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[453-526]
- Domain count: 2
- Matched identifier: RROC_0110023
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 453-526 ; HTH_18 453-526
Cluster members and taxonomy
Representative gene: GCF_003460565#DWZ44_RS08635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 967 · GCF_003460565
AssemblyASM346056v1 · Scaffoldhaploid
Genome composition3 839 213 bp · 46,5% GCBlautia sp. AF32-4BH
Signal transduction countsGenes 91 · HK 46 · RR 43CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key