1 Response_reg#1
3-112 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:3:7.79e-32:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ44_RS03760
Response regulator OmpR family
Blautia sp. AF32-4BH · GCF_003460565
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460565#DWZ44_RS03760Stable P2CS identifier used across views.
GenomeGCF_003460565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:146:6.7e-25:221:78:77- Raw architecture: Response_reg:3:7.79e-32:112:110:111#Trans_reg_C:146:6.7e-25:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460565::NZ_QTVL01000002.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span214059-215770Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ44_03775RefSeq proteinWP_117500093.1
Context group ID
GCF_003460565::NZ_QTVL01000002.1::G00016Context members
DWZ44_RS03755DWZ44_RS03760
Partner locus tags
DWZ44_RS03755DWZ44_RS03760
Partner old locus tags
DWZ44_03770DWZ44_03775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117500093.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4W1I3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4W1I3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ44_RS03760Primary locus identifier stored in the genes table.
Old locus tagDWZ44_03775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTVL01000002.1Sequence record reported by the local genomic context database.
Genomic interval215 087-215 770 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span214 059-215 770 ntGCF_003460565::NZ_QTVL01000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460565::NZ_QTVL01000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTVL01000002.1All displayed genes belong to this local TCS context.
Neighborhood span214 059-215 770 nt1 712 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
214 059 nt215 770 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ44_RS03755GCF_003460565#DWZ44_RS03755
HKClassic
214 059-215 090 nt · Reverse (-)
DWZ44_RS03760GCF_003460565#DWZ44_RS03760
RROmpRCurrent focus
215 087-215 770 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460565#DWZ44_RS03760The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1366849
Simplified PFAM architecture for RROC_1366849
PFAM domain coverage: 184 / 227 aa (81.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1366849
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_003460565#DWZ44_RS03760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 967 · GCF_003460565
AssemblyASM346056v1 · Scaffoldhaploid
Genome composition3 839 213 bp · 46,5% GCBlautia sp. AF32-4BH
Signal transduction countsGenes 91 · HK 46 · RR 43CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key