1 Response_reg#1
1-96 aa · 96 aa · 45.3% of protein
Raw token
Response_reg:1:0.00000000041:96:96:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW84_RS01385
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_003460425
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460425#DWW84_RS01385Stable P2CS identifier used across views.
GenomeGCF_003460425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 212 aa (71.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
148-202 aa · 55 aa · 25.9% of protein
Raw token
HTH_LUXR:148:1.04e-19:202:55:58- Raw architecture: Response_reg:1:0.00000000041:96:96:111#HTH_LUXR:148:1.04e-19:202:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460425::NZ_QRXU01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span345112-345750Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW84_01385RefSeq proteinWP_259319189.1
Context group ID
GCF_003460425::NZ_QRXU01000001.1::G00004Context members
DWW84_RS01385
Partner locus tags
DWW84_RS01385
Partner old locus tags
DWW84_01385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_259319189.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW84_RS01385Primary locus identifier stored in the genes table.
Old locus tagDWW84_01385Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXU01000001.1Sequence record reported by the local genomic context database.
Genomic interval345 112-345 750 nt639 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span345 112-345 750 ntGCF_003460425::NZ_QRXU01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460425::NZ_QRXU01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span345 112-345 750 nt639 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
345 112 nt345 750 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWW84_RS01385GCF_003460425#DWW84_RS01385
RRNarLCurrent focus
345 112-345 750 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460425#DWW84_RS01385The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1990379
Simplified PFAM architecture for RROC_1990379
PFAM domain coverage: 155 / 212 aa (73.1%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-102] | GerE[149-202]
- Domain count: 2
- Matched identifier: RROC_1990379
- Positioned domains: Response_reg 2-102 ; Response_reg 2-102 ; GerE 149-202 ; GerE 149-202
Cluster members and taxonomy
Representative gene: GCF_003460425#DWW84_RS01385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003460425
AssemblyASM346042v1 · Scaffoldhaploid
Genome composition2 238 891 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 10 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key