1 Response_reg#1
4-112 aa · 109 aa · 54.8% of protein
Raw token
Response_reg:4:0.0000000000773:112:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW89_RS16330
Response regulator, unclassified
Agathobacter rectalis · GCF_003460385
ClassRRTypeunclassifiedLength199 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460385#DWW89_RS16330Stable P2CS identifier used across views.
GenomeGCF_003460385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length199 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 199 aa (54.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa199 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.0000000000773:112:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460385::NZ_QRXR01000047.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span8033-8632Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW89_16330RefSeq proteinWP_117995253.1
Context group ID
GCF_003460385::NZ_QRXR01000047.1::G00038Context members
DWW89_RS16330
Partner locus tags
DWW89_RS16330
Partner old locus tags
DWW89_16330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117995253.1Primary protein accession used for annex mappings.
UniProt accessionA0A412RE58Primary UniProt accession resolved in the annex database.
UniProt IDA0A412RE58_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW89_RS16330Primary locus identifier stored in the genes table.
Old locus tagDWW89_16330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXR01000047.1Sequence record reported by the local genomic context database.
Genomic interval8 033-8 632 nt600 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 033-8 632 ntGCF_003460385::NZ_QRXR01000047.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460385::NZ_QRXR01000047.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXR01000047.1All displayed genes belong to this local TCS context.
Neighborhood span8 033-8 632 nt600 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 033 nt8 632 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWW89_RS16330GCF_003460385#DWW89_RS16330
RRunclassifiedCurrent focus
8 033-8 632 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460385#DWW89_RS16330The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2145063
Simplified PFAM architecture for RROC_2145063
PFAM domain coverage: 99 / 199 aa (49.7%)
1 aa199 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[15-113]
- Domain count: 1
- Matched identifier: RROC_2145063
- Positioned domains: Response_reg 15-113 ; Response_reg 15-113
Cluster members and taxonomy
Representative gene: GCF_003460385#DWW89_RS16330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003460385
AssemblyASM346038v1 · Scaffoldhaploid
Genome composition3 481 355 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 36 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key