1 HAMP#1
179-246 aa · 68 aa · 14.2% of protein
Raw token
HAMP:179:0.000000000000247:246:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW89_RS12375
Histidine kinase, Classic
Agathobacter rectalis · GCF_003460385
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460385#DWW89_RS12375Stable P2CS identifier used across views.
GenomeGCF_003460385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 479 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation3 items
2 HisKA#2
253-312 aa · 60 aa · 12.5% of protein
Raw token
HisKA:253:4.98e-16:312:60:643 HATPase_c#3
364-474 aa · 111 aa · 23.2% of protein
Raw token
HATPase_c:364:2.82e-32:474:111:109- Raw architecture: HAMP:179:0.000000000000247:246:68:69#HisKA:253:4.98e-16:312:60:64#HATPase_c:364:2.82e-32:474:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460385::NZ_QRXR01000022.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36203-38346Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW89_12375RefSeq proteinWP_117994635.1
Context group ID
GCF_003460385::NZ_QRXR01000022.1::G00024Context members
DWW89_RS12370DWW89_RS12375
Partner locus tags
DWW89_RS12370DWW89_RS12375
Partner old locus tags
DWW89_12370DWW89_12375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117994635.1Primary protein accession used for annex mappings.
UniProt accessionA0A412RHK9Primary UniProt accession resolved in the annex database.
UniProt IDA0A412RHK9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW89_RS12375Primary locus identifier stored in the genes table.
Old locus tagDWW89_12375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXR01000022.1Sequence record reported by the local genomic context database.
Genomic interval36 907-38 346 nt1 440 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 203-38 346 ntGCF_003460385::NZ_QRXR01000022.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460385::NZ_QRXR01000022.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXR01000022.1All displayed genes belong to this local TCS context.
Neighborhood span36 203-38 346 nt2 144 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 203 nt38 346 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW89_RS12370GCF_003460385#DWW89_RS12370
RROmpR
36 203-36 904 nt · Forward (+)
DWW89_RS12375GCF_003460385#DWW89_RS12375
HKClassicCurrent focus
36 907-38 346 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460385#DWW89_RS12375The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1630228
Simplified PFAM architecture for HKOC_1630228
PFAM domain coverage: 224 / 479 aa (46.8%)
1 aa479 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[197-247] | HisKA[253-314] | HATPase_c[365-475]
- Domain count: 3
- Matched identifier: HKOC_1630228
- Positioned domains: HAMP 197-247 ; HisKA 253-314 ; HATPase_c 365-475
Cluster members and taxonomy
Representative gene: GCF_003460385#DWW89_RS12375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003460385
AssemblyASM346038v1 · Scaffoldhaploid
Genome composition3 481 355 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 36 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key