1 HisKA#1
197-260 aa · 64 aa · 15.2% of protein
Raw token
HisKA:197:0.0000000789:260:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWW89_RS01910
Histidine kinase, Classic
Agathobacter rectalis · GCF_003460385
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460385#DWW89_RS01910Stable P2CS identifier used across views.
GenomeGCF_003460385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 421 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
309-418 aa · 110 aa · 26.1% of protein
Raw token
HATPase_c:309:6.47e-31:418:110:109- Raw architecture: HisKA:197:0.0000000789:260:64:64#HATPase_c:309:6.47e-31:418:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460385::NZ_QRXR01000002.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span138458-140388Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWW89_01910RefSeq proteinWP_117992951.1
Context group ID
GCF_003460385::NZ_QRXR01000002.1::G00017Context members
DWW89_RS01910DWW89_RS01915
Partner locus tags
DWW89_RS01910DWW89_RS01915
Partner old locus tags
DWW89_01910DWW89_01915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117992951.1Primary protein accession used for annex mappings.
UniProt accessionA0A414LXH3Primary UniProt accession resolved in the annex database.
UniProt IDA0A414LXH3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWW89_RS01910Primary locus identifier stored in the genes table.
Old locus tagDWW89_01910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXR01000002.1Sequence record reported by the local genomic context database.
Genomic interval138 458-139 723 nt1 266 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span138 458-140 388 ntGCF_003460385::NZ_QRXR01000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460385::NZ_QRXR01000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXR01000002.1All displayed genes belong to this local TCS context.
Neighborhood span138 458-140 388 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 458 nt140 388 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWW89_RS01910GCF_003460385#DWW89_RS01910
HKClassicCurrent focus
138 458-139 723 nt · Reverse (-)
DWW89_RS01915GCF_003460385#DWW89_RS01915
RROmpR
139 699-140 388 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460385#DWW89_RS01910The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2258506
Simplified PFAM architecture for HKOC_2258506
PFAM domain coverage: 175 / 421 aa (41.6%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[197-260] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2258506
- Positioned domains: HisKA 197-260 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_003460385#DWW89_RS01910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003460385
AssemblyASM346038v1 · Scaffoldhaploid
Genome composition3 481 355 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 91 · HK 36 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key